Variant report

Variant	rs7919600
Chromosome Location	chr10:118702670-118702671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118702160..118704504-chr10:118763132..118765142,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627192	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	0.94[YRI][hapmap]
rs7091456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	0.98[AFR][1000 genomes]
rs7903166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:118667400-118703200	Weak transcription	Aorta	Aorta
7	chr10:118671000-118702800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:118673000-118706400	Weak transcription	NH-A	brain
9	chr10:118673800-118706400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr10:118675000-118706600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:118678000-118706600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:118680000-118706800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:118680800-118703200	Weak transcription	HMEC	breast
14	chr10:118687200-118706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr10:118689800-118702800	Weak transcription	HepG2	liver
16	chr10:118690200-118706400	Weak transcription	HSMM	muscle
17	chr10:118694800-118706600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:118695800-118706400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:118696200-118703000	Weak transcription	Fetal Brain Male	brain
20	chr10:118697200-118706600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:118697600-118702800	Strong transcription	Brain Hippocampus Middle	brain
22	chr10:118697600-118705600	Strong transcription	A549	lung
23	chr10:118697600-118707000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:118697800-118705400	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr10:118697800-118706600	Weak transcription	HSMMtube	muscle
26	chr10:118698000-118706400	Weak transcription	NHDF-Ad	bronchial
27	chr10:118698200-118703200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr10:118698200-118706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:118698400-118702800	Weak transcription	Colonic Mucosa	Colon
30	chr10:118699000-118706200	Weak transcription	Lung	lung
31	chr10:118699000-118706800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:118699000-118707600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:118699200-118703200	Weak transcription	Gastric	stomach
34	chr10:118699200-118704000	Weak transcription	Fetal Stomach	stomach
35	chr10:118699200-118705400	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr10:118699200-118707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr10:118699200-118709800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:118699200-118710400	Weak transcription	Pancreas	Pancrea
39	chr10:118699200-118712400	Weak transcription	Esophagus	oesophagus
40	chr10:118699200-118724200	Weak transcription	Fetal Intestine Small	intestine
41	chr10:118699200-118740600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:118699200-118748200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr10:118699600-118703200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr10:118699800-118702800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:118699800-118703200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:118700000-118710400	Weak transcription	Adipose Nuclei	Adipose
47	chr10:118700000-118736800	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:118700200-118702800	Weak transcription	Hela-S3	cervix
49	chr10:118700200-118703200	Weak transcription	Brain Anterior Caudate	brain
50	chr10:118700200-118703200	Weak transcription	Duodenum Mucosa	Duodenum

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