Variant report

Variant	rs2627193
Chromosome Location	chr10:118669460-118669461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:118663647..118665511-chr10:118669117..118672054,2	MCF-7	breast:
2	chr10:118669411..118671708-chr10:118673236..118675988,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	0.88[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627192	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	0.94[YRI][hapmap]
rs7091456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	1.00[AFR][1000 genomes]
rs7903166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919600	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
8	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
9	chr10:118651800-118670600	Weak transcription	HSMMtube	muscle
10	chr10:118651800-118689800	Weak transcription	HSMM	muscle
11	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:118652000-118671600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:118653000-118679600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:118653200-118672600	Weak transcription	Gastric	stomach
16	chr10:118653200-118679200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:118654400-118677200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr10:118655800-118671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:118657800-118673600	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:118659000-118671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:118659000-118671800	Weak transcription	Lung	lung
27	chr10:118659200-118682000	Weak transcription	Left Ventricle	heart
28	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
30	chr10:118659400-118670400	Weak transcription	Brain Angular Gyrus	brain
31	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
32	chr10:118661800-118673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:118661800-118680200	Weak transcription	HMEC	breast
34	chr10:118662600-118670200	Weak transcription	Brain Anterior Caudate	brain
35	chr10:118662600-118678000	Weak transcription	K562	blood
36	chr10:118663800-118670200	Weak transcription	Fetal Brain Male	brain
37	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:118665000-118682600	Weak transcription	Colonic Mucosa	Colon
42	chr10:118665200-118682200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:118665600-118672600	Weak transcription	NHEK	skin
44	chr10:118665800-118679400	Weak transcription	Adipose Nuclei	Adipose
45	chr10:118666600-118671200	Weak transcription	NH-A	brain
46	chr10:118666600-118686400	Weak transcription	HUVEC	blood vessel
47	chr10:118666800-118670000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:118666800-118672400	Weak transcription	A549	lung
49	chr10:118666800-118676400	Weak transcription	Brain Germinal Matrix	brain
50	chr10:118667000-118670200	Weak transcription	Fetal Brain Female	brain

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