Variant report

Variant	rs7904342
Chromosome Location	chr10:118748764-118748765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118746402..118749299-chr10:118752056..118754403,2	MCF-7	breast:
2	chr10:118747095..118751622-chr10:118752184..118758339,7	K562	blood:
3	chr10:118731343..118732949-chr10:118747985..118750753,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10749232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10787733	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	1.00[CHB][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10787755	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10886018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11197905	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898345	1.00[ASN][1000 genomes]
rs1905537	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2083023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	1.00[ASW][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2576438	1.00[ASN][1000 genomes]
rs2627192	0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	0.94[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2901108	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3981233	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4103264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs4752023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4752029	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6585423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7076113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7079998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7085068	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7091456	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	0.94[AFR][1000 genomes]
rs7101129	1.00[ASN][1000 genomes]
rs7903166	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7903949	1.00[ASN][1000 genomes]
rs7906476	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7919600	0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118703600-118752200	Weak transcription	Gastric	stomach
2	chr10:118721600-118764000	Weak transcription	Ovary	ovary
3	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:118735000-118752000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:118736200-118751400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:118736400-118753000	Weak transcription	Liver	Liver
8	chr10:118737200-118750000	Weak transcription	A549	lung
9	chr10:118737200-118762800	Weak transcription	NHEK	skin
10	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
11	chr10:118738800-118749200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:118739200-118750000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:118739400-118750800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:118741000-118756400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:118744600-118749000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:118744600-118749000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr10:118744600-118749000	Weak transcription	Brain Anterior Caudate	brain
19	chr10:118745000-118760400	Weak transcription	K562	blood
20	chr10:118745600-118751800	Weak transcription	Hela-S3	cervix
21	chr10:118746800-118749200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:118747400-118763000	Weak transcription	HUVEC	blood vessel
23	chr10:118747600-118753000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr10:118748200-118749400	Enhancers	Fetal Intestine Small	intestine
25	chr10:118748200-118749800	Enhancers	Brain Germinal Matrix	brain
26	chr10:118748200-118750000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:118748200-118750200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:118748200-118750200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr10:118748200-118750800	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr10:118748200-118750800	Enhancers	Brain Hippocampus Middle	brain
31	chr10:118748200-118752600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:118748200-118753600	Enhancers	Brain Substantia Nigra	brain
33	chr10:118748400-118748800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr10:118748400-118748800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:118748400-118748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:118748400-118748800	Weak transcription	Brain Angular Gyrus	brain
37	chr10:118748400-118748800	Weak transcription	Fetal Intestine Large	intestine
38	chr10:118748400-118749000	Weak transcription	Fetal Brain Male	brain
39	chr10:118748400-118750000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr10:118748400-118750200	Enhancers	Brain Cingulate Gyrus	brain
41	chr10:118748400-118750400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr10:118748400-118752400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr10:118748600-118748800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:118748600-118749000	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:118748600-118750000	Enhancers	HepG2	liver
46	chr10:118748600-118750200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:118748600-118752600	Enhancers	HUES6 Cell Line	embryonic stem cell

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