Variant report

Variant	rs2627192
Chromosome Location	chr10:118665856-118665857
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10787733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10787734	0.83[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10886018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1905537	0.89[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2083023	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2429364	0.82[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2449807	0.82[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2531691	0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2627193	0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3981233	0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4103264	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752019	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4752022	0.88[YRI][hapmap]
rs7091456	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7093852	0.98[AFR][1000 genomes]
rs7903166	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7904342	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7919600	0.94[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118637600-118670400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:118639000-118666600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:118642600-118670400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:118645400-118673200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:118647400-118680000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:118648800-118698600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:118649200-118670400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:118649200-118681200	Weak transcription	Stomach Mucosa	stomach
9	chr10:118649200-118698400	Weak transcription	Esophagus	oesophagus
10	chr10:118651800-118670600	Weak transcription	HSMMtube	muscle
11	chr10:118651800-118689800	Weak transcription	HSMM	muscle
12	chr10:118651800-118706600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:118652000-118671600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:118652000-118736200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:118653000-118679600	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr10:118653200-118666600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:118653200-118672600	Weak transcription	Gastric	stomach
18	chr10:118653200-118679200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:118653200-118684600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:118653200-118706800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:118653400-118667200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:118653400-118707600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:118654400-118677200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:118654400-118692200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:118655000-118692400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr10:118655800-118671200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr10:118657800-118673600	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:118658800-118668600	Strong transcription	Liver	Liver
29	chr10:118659000-118667000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:118659000-118671600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr10:118659000-118671800	Weak transcription	Lung	lung
32	chr10:118659200-118666600	Weak transcription	Aorta	Aorta
33	chr10:118659200-118682000	Weak transcription	Left Ventricle	heart
34	chr10:118659200-118697800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr10:118659200-118697800	Weak transcription	Fetal Stomach	stomach
36	chr10:118659400-118667000	Weak transcription	Brain Substantia Nigra	brain
37	chr10:118659400-118670400	Weak transcription	Brain Angular Gyrus	brain
38	chr10:118660000-118666600	Weak transcription	Ovary	ovary
39	chr10:118660400-118688200	Weak transcription	Fetal Kidney	kidney
40	chr10:118661800-118673200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr10:118661800-118680200	Weak transcription	HMEC	breast
42	chr10:118662600-118670200	Weak transcription	Brain Anterior Caudate	brain
43	chr10:118662600-118678000	Weak transcription	K562	blood
44	chr10:118663200-118666800	Strong transcription	A549	lung
45	chr10:118663800-118670200	Weak transcription	Fetal Brain Male	brain
46	chr10:118663800-118707000	Weak transcription	Stomach Smooth Muscle	stomach
47	chr10:118664000-118684800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr10:118664600-118690600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr10:118664600-118693200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr10:118665000-118666400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links