Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10749232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10749239	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10787734	1.00[CHB][hapmap]
rs10787755	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11197905	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1898346	0.94[ASN][1000 genomes]
rs1898356	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1905537	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2901108	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3981233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4752022	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4752023	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4752025	0.82[ASN][1000 genomes]
rs4752027	1.00[ASN][1000 genomes]
rs4752029	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6585423	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6585427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7076113	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7079998	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7085068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7085319	0.94[ASN][1000 genomes]
rs7096110	1.00[ASN][1000 genomes]
rs7906476	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118855000-118860600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr10:118856400-118860800	Weak transcription	Brain Substantia Nigra	brain
3	chr10:118856600-118860800	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:118857400-118860600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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