Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs2247860	0.81[AMR][1000 genomes]
rs2260200	0.84[AMR][1000 genomes]
rs2265886	0.88[AMR][1000 genomes]
rs2265954	0.84[AMR][1000 genomes]
rs2393954	0.81[ASN][1000 genomes]
rs2492405	0.84[AMR][1000 genomes]
rs2492408	0.81[AMR][1000 genomes]
rs2492409	0.81[AMR][1000 genomes]
rs2492410	0.81[AMR][1000 genomes]
rs2492411	0.81[AMR][1000 genomes]
rs2493648	0.84[AMR][1000 genomes]
rs2819026	0.84[AMR][1000 genomes]
rs2999223	0.90[ASN][1000 genomes]
rs2999225	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2999287	0.80[AMR][1000 genomes]
rs3006405	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3006408	0.83[ASN][1000 genomes]
rs3006409	0.86[ASN][1000 genomes]
rs3750890	0.83[ASN][1000 genomes]
rs4551711	0.83[AMR][1000 genomes]
rs4559639	0.84[AMR][1000 genomes]
rs4584528	0.84[AMR][1000 genomes]
rs7069214	0.84[AMR][1000 genomes]
rs7089290	0.84[AMR][1000 genomes]
rs7914140	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9422371	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1797129	chr10:43996713-44002994	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:43994600-44002200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43995200-43997600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:43996400-44002400	Weak transcription	Brain Cingulate Gyrus	brain

Quick Search: