Variant report

Variant	rs3006408
Chromosome Location	chr10:43981731-43981732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10751319	0.83[ASN][1000 genomes]
rs10793430	0.83[ASN][1000 genomes]
rs10793431	0.82[ASN][1000 genomes]
rs10899798	0.82[ASN][1000 genomes]
rs10899799	0.82[ASN][1000 genomes]
rs11238542	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1126487	0.83[ASN][1000 genomes]
rs12779063	0.82[ASN][1000 genomes]
rs1416226	0.82[ASN][1000 genomes]
rs2066043	0.85[ASN][1000 genomes]
rs2066044	0.85[ASN][1000 genomes]
rs2247860	0.86[ASN][1000 genomes]
rs2248332	0.83[ASN][1000 genomes]
rs2248335	0.86[ASN][1000 genomes]
rs2248469	0.86[ASN][1000 genomes]
rs2248706	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2252783	0.82[ASN][1000 genomes]
rs2252785	0.82[ASN][1000 genomes]
rs2256613	0.83[ASN][1000 genomes]
rs2259045	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260162	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260200	0.89[ASN][1000 genomes]
rs2261665	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265886	0.89[ASN][1000 genomes]
rs2265954	0.89[ASN][1000 genomes]
rs2393954	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492403	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2492405	0.89[ASN][1000 genomes]
rs2492408	0.88[ASN][1000 genomes]
rs2492409	0.86[ASN][1000 genomes]
rs2492410	0.86[ASN][1000 genomes]
rs2492411	0.86[ASN][1000 genomes]
rs2493648	0.90[ASN][1000 genomes]
rs2812797	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2819021	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2819026	0.89[ASN][1000 genomes]
rs2999223	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2999225	0.91[ASN][1000 genomes]
rs2999276	0.82[ASN][1000 genomes]
rs2999282	0.85[ASN][1000 genomes]
rs2999287	0.83[ASN][1000 genomes]
rs3006405	0.90[ASN][1000 genomes]
rs3006409	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3750890	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4551711	0.89[ASN][1000 genomes]
rs4559639	0.89[ASN][1000 genomes]
rs4584528	0.89[ASN][1000 genomes]
rs4597022	0.82[ASN][1000 genomes]
rs6421744	0.91[ASN][1000 genomes]
rs7069214	0.89[ASN][1000 genomes]
rs7070769	0.83[ASN][1000 genomes]
rs7081729	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089290	0.89[ASN][1000 genomes]
rs7092599	0.82[ASN][1000 genomes]
rs7894374	0.82[ASN][1000 genomes]
rs7914140	0.98[ASN][1000 genomes]
rs7918726	0.83[ASN][1000 genomes]
rs7920539	0.83[ASN][1000 genomes]
rs9422371	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:43978600-43982400	Weak transcription	Brain Angular Gyrus	brain

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