Variant report

Variant	rs3006405
Chromosome Location	chr10:43999963-43999964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10751319	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2247860	0.83[AMR][1000 genomes]
rs2259045	0.81[ASN][1000 genomes]
rs2260162	0.81[ASN][1000 genomes]
rs2260200	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265886	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265954	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2393950	0.82[EUR][1000 genomes]
rs2393954	0.89[ASN][1000 genomes]
rs2492403	0.81[ASN][1000 genomes]
rs2492405	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2492408	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2492409	0.83[AMR][1000 genomes]
rs2492410	0.83[AMR][1000 genomes]
rs2492411	0.83[AMR][1000 genomes]
rs2493648	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2819026	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2999223	0.96[ASN][1000 genomes]
rs2999225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2999287	0.82[AMR][1000 genomes]
rs3006408	0.90[ASN][1000 genomes]
rs3006409	0.93[ASN][1000 genomes]
rs3750890	0.90[ASN][1000 genomes]
rs3999097	0.81[EUR][1000 genomes]
rs4551711	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4559639	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4584528	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6421744	0.83[ASN][1000 genomes]
rs7069214	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7081729	0.85[ASN][1000 genomes]
rs7089290	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7914140	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9422371	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1797129	chr10:43996713-44002994	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1816330	chr10:43999354-44002994	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:43994600-44002200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43996400-44002400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:43998000-44005000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:43999600-44000000	Weak transcription	Brain Angular Gyrus	brain

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