Variant report

Variant	rs3750890
Chromosome Location	chr10:43978087-43978088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43971469..43973705-chr10:43977289..43979716,2	K562	blood:
2	chr10:43976615..43979208-chr10:43982214..43983793,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10751319	0.83[ASN][1000 genomes]
rs10793430	0.83[ASN][1000 genomes]
rs10793431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10899794	0.85[JPT][hapmap]
rs10899797	0.85[JPT][hapmap]
rs10899798	0.82[ASN][1000 genomes]
rs10899799	0.82[ASN][1000 genomes]
rs11238542	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1126487	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs12779063	0.82[ASN][1000 genomes]
rs1416226	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2066043	0.85[ASN][1000 genomes]
rs2066044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2247860	0.86[ASN][1000 genomes]
rs2247979	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2247981	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2248332	0.83[ASN][1000 genomes]
rs2248335	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2248469	0.86[ASN][1000 genomes]
rs2248706	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2250444	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs2252783	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2252785	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2256613	0.83[ASN][1000 genomes]
rs2259045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260162	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2261636	0.85[JPT][hapmap]
rs2261665	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2265954	0.89[ASN][1000 genomes]
rs2393954	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492403	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2492405	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2492408	0.88[ASN][1000 genomes]
rs2492409	0.86[ASN][1000 genomes]
rs2492410	0.86[ASN][1000 genomes]
rs2492411	0.86[ASN][1000 genomes]
rs2493648	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2812797	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2819021	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2819026	0.89[ASN][1000 genomes]
rs2999223	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2999225	0.91[ASN][1000 genomes]
rs2999276	0.82[ASN][1000 genomes]
rs2999282	0.85[ASN][1000 genomes]
rs2999287	0.83[ASN][1000 genomes]
rs3006405	0.90[ASN][1000 genomes]
rs3006408	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3006409	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4551711	0.89[ASN][1000 genomes]
rs4559639	0.89[ASN][1000 genomes]
rs4584528	0.89[ASN][1000 genomes]
rs4597022	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4948726	0.85[JPT][hapmap]
rs6421744	0.91[ASN][1000 genomes]
rs6593513	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs7069214	0.89[ASN][1000 genomes]
rs7070769	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs7081729	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7089290	0.89[ASN][1000 genomes]
rs7092599	0.82[ASN][1000 genomes]
rs7894374	0.82[ASN][1000 genomes]
rs7905676	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs7914140	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7918726	0.83[ASN][1000 genomes]
rs7920539	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9422371	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43967400-43978600	Weak transcription	Pancreas	Pancrea
2	chr10:43969800-43978200	Weak transcription	Fetal Kidney	kidney
3	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:43976000-43979200	ZNF genes & repeats	Liver	Liver
5	chr10:43976200-43978600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:43976200-43978600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:43976200-43978600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr10:43976200-43978800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr10:43976400-43978200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:43976400-43978400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:43976400-43978400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr10:43976400-43978400	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr10:43976400-43978600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr10:43976400-43978600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:43976400-43978600	ZNF genes & repeats	Ovary	ovary
16	chr10:43976400-43978800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:43976600-43978200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr10:43976600-43978600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr10:43976800-43978200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
20	chr10:43977000-43978400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
21	chr10:43977000-43979000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
22	chr10:43977200-43978200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr10:43977200-43978200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
24	chr10:43977200-43978400	ZNF genes & repeats	Left Ventricle	heart
25	chr10:43977200-43978400	ZNF genes & repeats	Psoas Muscle	Psoas
26	chr10:43977200-43978600	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr10:43977200-43978600	ZNF genes & repeats	Brain Angular Gyrus	brain
28	chr10:43977200-43978600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
29	chr10:43977200-43978600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:43977200-43978600	ZNF genes & repeats	Fetal Lung	lung
31	chr10:43977200-43978600	ZNF genes & repeats	HSMMtube	muscle
32	chr10:43977200-43978800	ZNF genes & repeats	Brain Hippocampus Middle	brain
33	chr10:43977400-43978200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr10:43977400-43978400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr10:43977400-43978400	ZNF genes & repeats	Dnd41	blood
36	chr10:43977600-43978400	ZNF genes & repeats	Brain Anterior Caudate	brain
37	chr10:43977800-43978600	ZNF genes & repeats	Fetal Brain Male	brain

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