Variant report

Variant	rs2999225
Chromosome Location	chr10:44001533-44001534
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10751319	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10793431	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs10899795	0.84[CEU][hapmap]
rs10899812	0.81[EUR][1000 genomes]
rs11238567	0.81[EUR][1000 genomes]
rs1126487	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1338558	0.82[EUR][1000 genomes]
rs1416226	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap]
rs2066044	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs2247860	0.83[AMR][1000 genomes]
rs2247979	0.83[CHB][hapmap]
rs2247981	0.83[CHB][hapmap]
rs2248335	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs2250444	0.83[CHB][hapmap]
rs2252783	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs2252785	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs2259045	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs2260162	0.82[ASN][1000 genomes]
rs2260200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2261636	0.80[JPT][hapmap]
rs2265886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2265954	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2393950	0.84[EUR][1000 genomes]
rs2393954	0.89[ASN][1000 genomes]
rs2492403	0.82[ASN][1000 genomes]
rs2492405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2492408	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2492409	0.83[AMR][1000 genomes]
rs2492410	0.83[AMR][1000 genomes]
rs2492411	0.83[AMR][1000 genomes]
rs2493648	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2819021	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2819026	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2999223	0.98[ASN][1000 genomes]
rs2999226	0.82[EUR][1000 genomes]
rs2999227	0.82[EUR][1000 genomes]
rs2999287	0.82[AMR][1000 genomes]
rs3006399	0.82[EUR][1000 genomes]
rs3006400	0.80[EUR][1000 genomes]
rs3006401	0.82[EUR][1000 genomes]
rs3006402	0.82[EUR][1000 genomes]
rs3006405	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3006406	0.82[EUR][1000 genomes]
rs3006407	0.82[EUR][1000 genomes]
rs3006408	0.91[ASN][1000 genomes]
rs3006409	0.94[ASN][1000 genomes]
rs3750890	0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3999097	0.82[EUR][1000 genomes]
rs4551711	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4559639	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4584528	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4597022	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs4948726	0.84[CHB][hapmap];0.80[JPT][hapmap]
rs6421744	0.84[ASN][1000 genomes]
rs6593513	0.80[JPT][hapmap]
rs7069214	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7070769	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7081729	0.86[ASN][1000 genomes]
rs7089290	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7901121	0.82[EUR][1000 genomes]
rs7905676	0.80[JPT][hapmap]
rs7914140	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920539	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9422371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1797129	chr10:43996713-44002994	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1816330	chr10:43999354-44002994	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:43994600-44002200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43996400-44002400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr10:43998000-44005000	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:44000400-44002800	Weak transcription	Ovary	ovary

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