Variant report

Variant	rs1076210
Chromosome Location	chr7:27471992-27471993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27466443..27468278-chr7:27470687..27472297,2	MCF-7	breast:
2	chr7:27470047..27472027-chr7:27474314..27477072,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10951165	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs11563380	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs11563567	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs11978918	0.87[ASW][hapmap];0.92[CEU][hapmap];0.83[CHD][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs12666726	0.93[CEU][hapmap];0.89[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12667419	0.92[EUR][1000 genomes]
rs12667457	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12668112	0.88[EUR][1000 genomes]
rs12668753	0.82[EUR][1000 genomes]
rs12668786	0.93[CEU][hapmap];0.89[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs12668981	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672272	0.94[EUR][1000 genomes]
rs12673629	0.83[EUR][1000 genomes]
rs17155267	0.83[EUR][1000 genomes]
rs17429641	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17429648	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17439221	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17439235	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs17439374	0.94[EUR][1000 genomes]
rs1985529	0.87[EUR][1000 genomes]
rs2074336	0.92[EUR][1000 genomes]
rs2893286	0.94[EUR][1000 genomes]
rs4298409	0.87[ASW][hapmap];0.92[CEU][hapmap];0.83[CHD][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs4470906	0.92[CEU][hapmap];0.84[CHD][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs56294122	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57356952	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58842477	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6966735	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72595217	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72595220	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7790517	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929242	0.92[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1076210	LOC441204	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27465200-27472200	Weak transcription	Stomach Mucosa	stomach
2	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:27469600-27472800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:27469800-27473000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:27470000-27472800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:27470800-27473200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:27471600-27474200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:27471800-27472200	Active TSS	Spleen	Spleen

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