Variant report

Variant	rs7790517
Chromosome Location	chr7:27494458-27494459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076210	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10951165	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11563380	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs11563567	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs11978918	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs12666726	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12667419	0.86[EUR][1000 genomes]
rs12667457	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12668112	0.83[EUR][1000 genomes]
rs12668753	0.83[EUR][1000 genomes]
rs12668786	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12668981	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12672272	0.88[EUR][1000 genomes]
rs12673629	0.84[EUR][1000 genomes]
rs17155267	0.84[EUR][1000 genomes]
rs17429641	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs17429648	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs17439221	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs17439235	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs17439374	0.88[EUR][1000 genomes]
rs1985529	0.81[EUR][1000 genomes]
rs2074336	0.86[EUR][1000 genomes]
rs2893286	0.88[EUR][1000 genomes]
rs4298409	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4470906	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs56294122	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57356952	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58842477	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6966735	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72595217	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72595220	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929242	0.87[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7790517	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27493400-27494600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27494000-27496200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:27494200-27496800	Weak transcription	NH-A	brain
4	chr7:27494200-27497000	Weak transcription	Osteobl	bone
5	chr7:27494200-27498400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:27494200-27498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:27494200-27498400	Weak transcription	Adipose Nuclei	Adipose
8	chr7:27494200-27498400	Weak transcription	NHLF	lung
9	chr7:27494200-27498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:27494400-27498600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:27494400-27498600	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links