Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076210	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10951165	0.88[EUR][1000 genomes]
rs11563380	0.86[EUR][1000 genomes]
rs11563567	0.88[EUR][1000 genomes]
rs11978918	0.88[EUR][1000 genomes]
rs12666726	0.83[EUR][1000 genomes]
rs12667419	0.86[EUR][1000 genomes]
rs12667457	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12668112	0.83[EUR][1000 genomes]
rs12668753	0.83[EUR][1000 genomes]
rs12668786	0.83[EUR][1000 genomes]
rs12668981	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12672272	0.88[EUR][1000 genomes]
rs12673629	0.84[EUR][1000 genomes]
rs17155267	0.84[EUR][1000 genomes]
rs17429641	0.86[EUR][1000 genomes]
rs17429648	0.86[EUR][1000 genomes]
rs17439221	0.86[EUR][1000 genomes]
rs17439235	0.86[EUR][1000 genomes]
rs17439374	0.88[EUR][1000 genomes]
rs1985529	0.81[EUR][1000 genomes]
rs2074336	0.86[EUR][1000 genomes]
rs2893286	0.88[EUR][1000 genomes]
rs4298409	0.86[EUR][1000 genomes]
rs4470906	0.88[EUR][1000 genomes]
rs56294122	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58842477	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6966735	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72595217	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72595220	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7790517	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929242	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57356952	TAX1BP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488600-27489200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr7:27488600-27489200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:27488600-27489400	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:27488800-27489200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
6	chr7:27488800-27489400	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr7:27488800-27489600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:27489000-27489200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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