Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27462153..27463834-chr7:27472462..27475213,2	MCF-7	breast:
2	chr7:27468218..27471547-chr7:27472130..27475962,5	K562	blood:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076210	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10951165	0.94[EUR][1000 genomes]
rs11563380	0.92[EUR][1000 genomes]
rs11563567	0.94[EUR][1000 genomes]
rs11978918	0.94[EUR][1000 genomes]
rs12666726	0.82[EUR][1000 genomes]
rs12667419	0.92[EUR][1000 genomes]
rs12668112	0.88[EUR][1000 genomes]
rs12668753	0.82[EUR][1000 genomes]
rs12668786	0.82[EUR][1000 genomes]
rs12668981	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12672272	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12673629	0.83[EUR][1000 genomes]
rs17155267	0.83[EUR][1000 genomes]
rs17429641	0.92[EUR][1000 genomes]
rs17429648	0.92[EUR][1000 genomes]
rs17439221	0.92[EUR][1000 genomes]
rs17439235	0.92[EUR][1000 genomes]
rs17439374	0.94[EUR][1000 genomes]
rs1985529	0.87[EUR][1000 genomes]
rs2074336	0.92[EUR][1000 genomes]
rs2893286	0.94[EUR][1000 genomes]
rs4298409	0.92[EUR][1000 genomes]
rs4470906	0.94[EUR][1000 genomes]
rs56294122	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57356952	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58842477	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6966735	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72595217	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72595220	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7790517	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929242	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27471600-27474200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr7:27472000-27474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:27472000-27474400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:27472000-27475200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:27472800-27474800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr7:27472800-27475200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:27473000-27474000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:27473000-27474600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:27473000-27475200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:27473200-27474200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr7:27473200-27474600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:27473600-27474600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr7:27473600-27474800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:27473800-27474000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:27473800-27474000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:27473800-27474000	Enhancers	Spleen	Spleen
17	chr7:27473800-27474200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr7:27473800-27474400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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