Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27476223..27478695-chr7:27480805..27482916,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076210	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10951165	0.94[EUR][1000 genomes]
rs11563380	0.92[EUR][1000 genomes]
rs11563567	0.94[EUR][1000 genomes]
rs11978918	0.94[EUR][1000 genomes]
rs12666726	0.82[EUR][1000 genomes]
rs12667419	0.92[EUR][1000 genomes]
rs12667457	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12668112	0.88[EUR][1000 genomes]
rs12668753	0.82[EUR][1000 genomes]
rs12668786	0.82[EUR][1000 genomes]
rs12668981	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12672272	0.94[EUR][1000 genomes]
rs12673629	0.83[EUR][1000 genomes]
rs17155267	0.83[EUR][1000 genomes]
rs17429641	0.92[EUR][1000 genomes]
rs17429648	0.92[EUR][1000 genomes]
rs17439221	0.92[EUR][1000 genomes]
rs17439235	0.92[EUR][1000 genomes]
rs17439374	0.94[EUR][1000 genomes]
rs1985529	0.87[EUR][1000 genomes]
rs2074336	0.92[EUR][1000 genomes]
rs2893286	0.94[EUR][1000 genomes]
rs4298409	0.92[EUR][1000 genomes]
rs4470906	0.94[EUR][1000 genomes]
rs56294122	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57356952	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58842477	1.00[EUR][1000 genomes]
rs6966735	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72595217	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7790517	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs929242	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27481600-27482600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr7:27481600-27482800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:27481800-27482600	Enhancers	Osteobl	bone
4	chr7:27481800-27482800	Enhancers	HMEC	breast
5	chr7:27481800-27482800	Enhancers	NHEK	skin
6	chr7:27482000-27482800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:27482200-27482600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:27482200-27482600	Enhancers	A549	lung
9	chr7:27482200-27482600	Enhancers	NHLF	lung
10	chr7:27482200-27482800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:27482200-27482800	Enhancers	NHDF-Ad	bronchial

Quick Search: