Variant report

Variant	rs6966735
Chromosome Location	chr7:27492429-27492430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1076210	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951165	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs11563380	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs11563567	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs11978918	0.85[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs12666726	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs12667419	0.88[EUR][1000 genomes]
rs12667457	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12668112	0.84[EUR][1000 genomes]
rs12668753	0.85[EUR][1000 genomes]
rs12668786	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.85[EUR][1000 genomes]
rs12668981	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672272	0.90[EUR][1000 genomes]
rs12673629	0.86[EUR][1000 genomes]
rs17155267	0.86[EUR][1000 genomes]
rs17429641	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs17429648	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs17439221	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs17439235	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs17439374	0.90[EUR][1000 genomes]
rs1985529	0.83[EUR][1000 genomes]
rs2074336	0.88[EUR][1000 genomes]
rs2893286	0.90[EUR][1000 genomes]
rs4298409	0.85[CEU][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs4470906	0.85[CEU][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs56294122	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57356952	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58842477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72595217	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72595220	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7790517	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs929242	0.85[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6966735	LOC441204	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27487200-27493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:27488800-27493400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:27489400-27493600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:27491800-27493400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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