Variant report

Variant	rs10773045
Chromosome Location	chr12:124351666-124351667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10773041	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10773043	0.95[EUR][1000 genomes]
rs10773046	0.85[ASN][1000 genomes]
rs10773047	0.83[ASN][1000 genomes]
rs10846562	0.84[ASN][1000 genomes]
rs10846564	0.94[ASN][1000 genomes]
rs10846566	0.94[EUR][1000 genomes]
rs10846567	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10846570	0.86[ASN][1000 genomes]
rs10846571	0.85[ASN][1000 genomes]
rs10846572	0.86[ASN][1000 genomes]
rs10846573	0.86[ASN][1000 genomes]
rs11057378	0.93[EUR][1000 genomes]
rs11057381	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11057383	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11057388	0.86[ASN][1000 genomes]
rs11057389	0.86[ASN][1000 genomes]
rs11057390	0.85[ASN][1000 genomes]
rs12099921	0.85[CHB][hapmap]
rs12228611	0.94[EUR][1000 genomes]
rs12306328	0.86[ASN][1000 genomes]
rs12307524	0.86[ASN][1000 genomes]
rs12579670	0.82[CHB][hapmap]
rs12580578	0.82[CHB][hapmap]
rs12580590	0.85[CHB][hapmap]
rs12581508	0.82[CHB][hapmap]
rs1317386	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1882489	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1922258	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2341779	0.94[ASN][1000 genomes]
rs4390427	0.88[ASN][1000 genomes]
rs4424748	0.83[ASN][1000 genomes]
rs4930727	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6488905	0.82[ASN][1000 genomes]
rs6488907	0.93[ASN][1000 genomes]
rs7296123	0.86[ASN][1000 genomes]
rs7297429	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7300037	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7303634	0.85[ASN][1000 genomes]
rs7313897	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7314278	0.86[ASN][1000 genomes]
rs7314335	0.94[ASN][1000 genomes]
rs7314963	0.95[EUR][1000 genomes]
rs7315108	0.82[CHB][hapmap]
rs7959519	0.93[ASN][1000 genomes]
rs7969440	0.85[CHB][hapmap]
rs7969937	0.82[CHB][hapmap]
rs7977449	0.82[CHB][hapmap]
rs9669530	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498024	chr12:123994372-124459856	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:124331400-124352800	Weak transcription	Fetal Brain Female	brain
2	chr12:124351400-124351800	Enhancers	HepG2	liver

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