Variant report

Variant	rs10780943
Chromosome Location	chr9:73154990-73154991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780944	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868850	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10868853	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13296513	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1414850	0.96[EUR][1000 genomes]
rs17535865	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932701	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34574970	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35112486	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57966195	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7020777	0.96[EUR][1000 genomes]
rs7033976	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034027	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046672	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7853385	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10780943	KLF9	cis	Muscle Skeletal	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73149200-73156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:73149200-73162200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:73150400-73155800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:73150600-73168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr9:73151400-73155800	Weak transcription	Right Ventricle	heart
6	chr9:73151400-73157400	Weak transcription	Brain Hippocampus Middle	brain
7	chr9:73151400-73168800	Weak transcription	Brain Substantia Nigra	brain
8	chr9:73154000-73155400	Enhancers	Osteobl	bone
9	chr9:73154000-73156000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:73154400-73156000	Weak transcription	Left Ventricle	heart
11	chr9:73154600-73155600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:73154600-73156800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr9:73154600-73158600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr9:73154600-73169000	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links