Variant report

Variant	rs35112486
Chromosome Location	chr9:73149220-73149221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780943	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10780944	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868850	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10868853	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13296513	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1414850	0.92[EUR][1000 genomes]
rs17535865	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932701	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34574970	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57966195	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020777	0.92[EUR][1000 genomes]
rs7033976	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034027	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7046672	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7853385	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35112486	KLF9	cis	Muscle Skeletal	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73141000-73149800	Weak transcription	NHLF	lung
2	chr9:73145400-73151000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:73145400-73154000	Weak transcription	Left Ventricle	heart
4	chr9:73146800-73154000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:73148400-73150400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:73148400-73151400	Enhancers	Osteobl	bone
7	chr9:73148800-73149600	Flanking Active TSS	HUVEC	blood vessel
8	chr9:73148800-73150000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:73148800-73151000	Enhancers	Fetal Heart	heart
10	chr9:73149000-73149800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:73149000-73150000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr9:73149200-73153800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:73149200-73153800	Weak transcription	Brain Angular Gyrus	brain
14	chr9:73149200-73154200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:73149200-73156000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:73149200-73162200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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