Variant report

Variant	rs7020777
Chromosome Location	chr9:73163835-73163836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780943	0.96[EUR][1000 genomes]
rs10780944	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10868850	0.83[EUR][1000 genomes]
rs10868853	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13296513	0.90[EUR][1000 genomes]
rs1414850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17535865	0.92[EUR][1000 genomes]
rs1932701	0.97[EUR][1000 genomes]
rs34574970	0.88[EUR][1000 genomes]
rs35112486	0.92[EUR][1000 genomes]
rs57966195	0.88[EUR][1000 genomes]
rs7033976	0.95[EUR][1000 genomes]
rs7034027	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046672	0.90[EUR][1000 genomes]
rs7853385	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73150600-73168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr9:73151400-73168800	Weak transcription	Brain Substantia Nigra	brain
3	chr9:73154600-73169000	Weak transcription	Right Atrium	heart
4	chr9:73157800-73168800	Weak transcription	Brain Hippocampus Middle	brain
5	chr9:73157800-73199800	Weak transcription	Aorta	Aorta
6	chr9:73161400-73168400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73161400-73168400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:73162000-73168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:73162200-73165200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:73162800-73168000	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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