Variant report

Variant	rs10780944
Chromosome Location	chr9:73157416-73157417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10780943	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868850	0.85[EUR][1000 genomes]
rs10868853	0.96[EUR][1000 genomes]
rs10868855	0.89[CEU][hapmap]
rs1317103	0.88[CEU][hapmap]
rs13296513	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13302860	0.88[CEU][hapmap]
rs1414850	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17535865	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1932701	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34574970	0.90[EUR][1000 genomes]
rs35112486	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57966195	0.90[EUR][1000 genomes]
rs7020777	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7033976	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034027	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7046672	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7853385	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Pubertal anthropometrics	23449627	GWAS catalog

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73149200-73162200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73150600-73168000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73151400-73168800	Weak transcription	Brain Substantia Nigra	brain
4	chr9:73154600-73158600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:73154600-73169000	Weak transcription	Right Atrium	heart
6	chr9:73156200-73158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:73156800-73157800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:73157200-73157600	Weak transcription	Osteobl	bone
9	chr9:73157200-73158200	Enhancers	Duodenum Mucosa	Duodenum
10	chr9:73157400-73157800	Enhancers	Adipose Nuclei	Adipose
11	chr9:73157400-73157800	Enhancers	Aorta	Aorta
12	chr9:73157400-73157800	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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