Variant report

Variant	rs17535865
Chromosome Location	chr9:73147438-73147439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10780943	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10780944	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868850	0.82[EUR][1000 genomes]
rs10868853	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13296513	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1414850	0.92[EUR][1000 genomes]
rs1932701	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34574970	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35112486	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57966195	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020777	0.92[EUR][1000 genomes]
rs7033976	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7034027	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7046672	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7853385	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17535865	KLF9	cis	Muscle Skeletal	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73141000-73148800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:73141000-73149800	Weak transcription	NHLF	lung
3	chr9:73145400-73151000	Weak transcription	Adipose Nuclei	Adipose
4	chr9:73145400-73154000	Weak transcription	Left Ventricle	heart
5	chr9:73146400-73149000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:73146600-73148400	Weak transcription	Osteobl	bone
7	chr9:73146800-73148000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr9:73146800-73149000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:73146800-73154000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:73147000-73148400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:73147000-73148800	Enhancers	HUVEC	blood vessel
12	chr9:73147400-73148200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr9:73147400-73148400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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