Variant report

Variant	rs34574970
Chromosome Location	chr9:73139062-73139063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10780943	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10780944	0.90[EUR][1000 genomes]
rs10868853	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13296513	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1414850	0.88[EUR][1000 genomes]
rs17535865	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1932701	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35112486	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57966195	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7020777	0.88[EUR][1000 genomes]
rs7033976	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7034027	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7046672	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7853385	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428219	chr9:73006269-73192535	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv831616	chr9:73077855-73220928	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs34574970	KLF9	cis	Muscle Skeletal	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73121200-73140400	Weak transcription	Psoas Muscle	Psoas
2	chr9:73135400-73140200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:73135600-73139800	Weak transcription	Osteobl	bone
4	chr9:73135600-73140000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:73135600-73140200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:73135600-73140400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:73135600-73145800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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