Variant report

Variant	rs10786066
Chromosome Location	chr10:94782567-94782568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10748589	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786065	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786067	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11812460	0.87[ASN][1000 genomes]
rs12256889	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3736936	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4411227	0.83[ASN][1000 genomes]
rs4568938	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4919594	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068500	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096857	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7895716	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8211	0.88[ASN][1000 genomes]
rs835273	0.92[ASN][1000 genomes]
rs835278	0.89[ASN][1000 genomes]
rs856534	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
5	chr10:94754400-94785000	Weak transcription	Dnd41	blood
6	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
11	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:94766600-94782600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:94768800-94786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:94770200-94788600	Weak transcription	K562	blood
15	chr10:94771400-94788000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr10:94772400-94783600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:94772800-94784000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr10:94772800-94785800	Weak transcription	Pancreas	Pancrea
20	chr10:94773000-94785600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:94773400-94800000	Weak transcription	Lung	lung
22	chr10:94774400-94786400	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:94774400-94787600	Weak transcription	Adipose Nuclei	Adipose
24	chr10:94775200-94784400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:94775200-94791400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:94775400-94786400	Weak transcription	Fetal Intestine Large	intestine
27	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:94776200-94783000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr10:94776200-94787600	Weak transcription	Fetal Intestine Small	intestine
30	chr10:94776400-94782800	Weak transcription	Primary T cells from cord blood	blood
31	chr10:94776600-94782800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:94777400-94784000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:94777400-94786400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:94777400-94788800	Weak transcription	HSMMtube	muscle
35	chr10:94778400-94785800	Weak transcription	A549	lung
36	chr10:94779600-94783600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr10:94779800-94786800	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:94779800-94789800	Weak transcription	Ovary	ovary
39	chr10:94780600-94801400	Weak transcription	Brain Anterior Caudate	brain
40	chr10:94781200-94783400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:94781200-94784200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:94781400-94785600	Weak transcription	Primary B cells from cord blood	blood
43	chr10:94781400-94785600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
45	chr10:94781600-94783800	Weak transcription	HUVEC	blood vessel
46	chr10:94782200-94783400	Enhancers	Liver	Liver

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