Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94820079..94822680-chr10:94824918..94827506,3	K562	blood:
2	chr10:94822689..94825636-chr10:94825703..94828168,2	K562	blood:

Variant related genes	Relation type
ENSG00000226425	Chromatin interaction
ENSG00000187553	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748589	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10786060	0.80[GIH][hapmap]
rs10786065	0.83[ASN][1000 genomes]
rs10786066	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10786067	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882123	0.80[GIH][hapmap]
rs10882125	0.80[GIH][hapmap]
rs10882129	0.80[GIH][hapmap]
rs11812460	0.81[CEU][hapmap];0.84[CHB][hapmap];0.83[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.86[ASN][1000 genomes]
rs1409385	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs1409386	0.81[CEU][hapmap];0.81[GIH][hapmap]
rs3736936	0.83[ASN][1000 genomes]
rs4411227	0.81[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap]
rs4568938	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4919594	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933753	0.80[GIH][hapmap]
rs7068232	0.80[GIH][hapmap]
rs7068500	0.87[ASN][1000 genomes]
rs7096857	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7895716	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8211	0.83[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs835273	0.92[ASN][1000 genomes]
rs835278	0.92[ASN][1000 genomes]
rs856534	0.92[ASN][1000 genomes]
rs9633694	0.80[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802015	chr10:94811983-94839960	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv895899	chr10:94818382-94836435	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94819800-94827800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:94822400-94827200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:94823000-94828200	Weak transcription	Pancreas	Pancrea
4	chr10:94823000-94828400	Weak transcription	Gastric	stomach
5	chr10:94823000-94829600	Weak transcription	K562	blood
6	chr10:94824000-94828200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:94825200-94827600	Weak transcription	Hela-S3	cervix
8	chr10:94825400-94830400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:94825600-94829200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:94826200-94828000	Weak transcription	Spleen	Spleen
11	chr10:94826400-94828000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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