Variant report

Variant	rs10786067
Chromosome Location	chr10:94802272-94802273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10748589	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786065	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786066	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11812460	0.87[ASN][1000 genomes]
rs12256889	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3736936	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4411227	0.83[ASN][1000 genomes]
rs4568938	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4919594	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7068500	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7096857	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895716	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8211	0.90[ASN][1000 genomes]
rs835273	0.90[ASN][1000 genomes]
rs835278	0.91[ASN][1000 genomes]
rs856534	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94775400-94812800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:94781400-94807600	Weak transcription	Psoas Muscle	Psoas
4	chr10:94783400-94802800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:94785200-94819000	Weak transcription	Thymus	Thymus
6	chr10:94786400-94809200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:94787200-94817600	Weak transcription	Dnd41	blood
8	chr10:94787800-94814000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:94788000-94819000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:94788000-94819400	Weak transcription	Left Ventricle	heart
11	chr10:94788400-94803400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:94788400-94811000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:94788400-94815800	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:94790800-94813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:94792600-94819600	Weak transcription	Aorta	Aorta
16	chr10:94792600-94819800	Weak transcription	HSMMtube	muscle
17	chr10:94793200-94811200	Weak transcription	HepG2	liver
18	chr10:94795000-94803200	Weak transcription	A549	lung
19	chr10:94795000-94810200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:94795600-94817800	Weak transcription	Fetal Intestine Small	intestine
21	chr10:94795800-94819600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr10:94798400-94804400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr10:94799600-94803200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:94799800-94809200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:94799800-94817000	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:94800000-94803200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:94800000-94803200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr10:94800000-94803200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr10:94800000-94803200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:94800000-94803400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr10:94800000-94818400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr10:94800800-94809000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:94800800-94817600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:94800800-94818000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr10:94801000-94807200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:94801000-94816600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:94801400-94818800	Weak transcription	Primary T cells from cord blood	blood
38	chr10:94801600-94803800	Enhancers	HUVEC	blood vessel
39	chr10:94801800-94820200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr10:94802000-94804200	Strong transcription	Primary B cells from cord blood	blood
41	chr10:94802200-94803400	Weak transcription	Primary neutrophils fromperipheralblood	blood

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