Variant report

Variant	rs3736936
Chromosome Location	chr10:94773667-94773668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10748584	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10748589	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap]
rs10786060	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10786065	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786066	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10786067	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10882121	1.00[CHB][hapmap]
rs10882123	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10882125	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs10882129	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs11516919	1.00[CHB][hapmap]
rs11812460	0.81[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs12256889	0.90[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs1409385	0.91[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs1409386	0.91[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs1987017	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs2490739	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs2490741	1.00[CHB][hapmap];0.84[GIH][hapmap]
rs4411227	0.81[CEU][hapmap];0.91[JPT][hapmap]
rs4508117	1.00[CHB][hapmap]
rs4568938	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4919594	0.95[CEU][hapmap];0.91[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933753	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs7068232	1.00[CHB][hapmap];0.89[GIH][hapmap]
rs7068500	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087174	1.00[CHB][hapmap]
rs7095772	1.00[CHB][hapmap]
rs7096857	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7895716	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap]
rs7914571	1.00[CHB][hapmap]
rs7915463	0.93[CHB][hapmap]
rs8211	0.93[CHB][hapmap];0.84[ASN][1000 genomes]
rs835238	1.00[CHB][hapmap]
rs835273	0.88[ASN][1000 genomes]
rs835278	0.85[ASN][1000 genomes]
rs856534	0.86[ASN][1000 genomes]
rs9633694	1.00[CHB][hapmap];0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
2	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
5	chr10:94749000-94774000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:94750000-94790200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:94750800-94774000	Weak transcription	Adipose Nuclei	Adipose
8	chr10:94750800-94794600	Weak transcription	Small Intestine	intestine
9	chr10:94754400-94785000	Weak transcription	Dnd41	blood
10	chr10:94756200-94774000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:94756800-94776200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:94757400-94784000	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:94757400-94784400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:94757400-94786000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:94757800-94773800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:94757800-94776000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:94757800-94777200	Weak transcription	HSMM	muscle
18	chr10:94757800-94784000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:94758000-94774000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:94758200-94774000	Weak transcription	Liver	Liver
21	chr10:94761000-94774000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:94762200-94791400	Weak transcription	Placenta	Placenta
23	chr10:94762400-94780600	Weak transcription	Primary B cells from cord blood	blood
24	chr10:94763400-94774000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:94763800-94778800	Weak transcription	HUVEC	blood vessel
26	chr10:94764200-94775800	Weak transcription	Fetal Intestine Small	intestine
27	chr10:94764800-94778200	Weak transcription	A549	lung
28	chr10:94766200-94790000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:94766600-94782600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:94767800-94773800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr10:94768600-94774000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:94768800-94786600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:94770200-94788600	Weak transcription	K562	blood
34	chr10:94771400-94788000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr10:94771600-94773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr10:94772200-94782200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:94772400-94783600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:94772600-94791800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:94772800-94776800	Weak transcription	Brain Cingulate Gyrus	brain
40	chr10:94772800-94784000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr10:94772800-94785800	Weak transcription	Pancreas	Pancrea
42	chr10:94773000-94775800	Weak transcription	Brain Angular Gyrus	brain
43	chr10:94773000-94785600	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:94773400-94775200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:94773400-94776400	Strong transcription	Primary T cells from cord blood	blood
46	chr10:94773400-94777400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr10:94773400-94800000	Weak transcription	Lung	lung

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