Variant report

Variant	rs1987017
Chromosome Location	chr10:94624759-94624760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94607241..94610451-chr10:94624679..94626976,3	MCF-7	breast:
2	chr10:94620976..94622865-chr10:94624489..94626160,2	K562	blood:
3	chr10:94623164..94625543-chr10:94648758..94650960,2	K562	blood:
4	chr10:94621432..94625440-chr10:94626833..94628903,3	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10748583	0.81[EUR][1000 genomes]
rs10748584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10748585	0.81[EUR][1000 genomes]
rs10786056	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786058	0.84[EUR][1000 genomes]
rs10786059	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10786060	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs10786061	0.81[EUR][1000 genomes]
rs10882115	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882117	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882120	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882121	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10882122	0.98[ASN][1000 genomes]
rs10882123	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882125	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs10882126	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10882127	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10882129	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs11187209	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11516919	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12769058	0.94[ASN][1000 genomes]
rs1409385	0.82[GIH][hapmap]
rs1409386	0.82[GIH][hapmap]
rs1571034	0.84[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs1964154	0.88[EUR][1000 genomes]
rs1967817	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246696	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2490736	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4284324	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4508117	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4933240	0.87[EUR][1000 genomes]
rs4933245	0.81[EUR][1000 genomes]
rs4933246	0.81[EUR][1000 genomes]
rs4933744	0.82[GIH][hapmap];0.87[TSI][hapmap]
rs4933748	0.94[ASN][1000 genomes]
rs4933751	0.81[EUR][1000 genomes]
rs4933753	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs4933754	0.81[EUR][1000 genomes]
rs4933756	0.81[EUR][1000 genomes]
rs7068232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087174	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7095772	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7097943	0.92[ASN][1000 genomes]
rs7908179	0.96[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7913949	0.96[ASN][1000 genomes]
rs7914571	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7915463	0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs8211	0.93[CHB][hapmap]
rs835238	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs9633694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9633696	0.81[EUR][1000 genomes]
rs9645558	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94618600-94624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:94619800-94626800	Weak transcription	K562	blood
3	chr10:94619800-94627000	Weak transcription	A549	lung
4	chr10:94619800-94628800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:94619800-94632800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:94621400-94625000	Weak transcription	Pancreas	Pancrea
8	chr10:94622400-94632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:94623400-94628000	Weak transcription	Small Intestine	intestine
10	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:94624600-94627000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:94624600-94627200	Weak transcription	HUVEC	blood vessel
13	chr10:94624600-94628600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr10:94624600-94632600	Weak transcription	Primary T cells from cord blood	blood
15	chr10:94624600-94632600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr10:94624600-94633000	Weak transcription	Primary B cells from cord blood	blood

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