Variant report

Variant	rs4933748
Chromosome Location	chr10:94614154-94614155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94606549..94609808-chr10:94611902..94615448,5	K562	blood:
2	chr10:94613465..94615830-chr10:94636991..94639878,2	K562	blood:
3	chr10:94607004..94609922-chr10:94613918..94616697,4	MCF-7	breast:
4	chr10:94447842..94450482-chr10:94613135..94614860,2	K562	blood:

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction
ENSG00000225118	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10748584	0.95[ASN][1000 genomes]
rs10786056	0.90[ASN][1000 genomes]
rs10882115	0.87[ASN][1000 genomes]
rs10882117	0.97[ASN][1000 genomes]
rs10882118	0.96[EUR][1000 genomes]
rs10882120	0.94[ASN][1000 genomes]
rs10882121	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882122	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882123	0.90[ASN][1000 genomes]
rs11187186	0.84[EUR][1000 genomes]
rs11187192	0.95[EUR][1000 genomes]
rs11187193	0.95[EUR][1000 genomes]
rs11187197	0.95[EUR][1000 genomes]
rs11516919	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12769058	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1967817	0.90[ASN][1000 genomes]
rs1987017	0.94[ASN][1000 genomes]
rs2246696	0.92[ASN][1000 genomes]
rs2422060	0.93[EUR][1000 genomes]
rs2490736	0.96[ASN][1000 genomes]
rs2490739	0.96[ASN][1000 genomes]
rs2490741	0.97[ASN][1000 genomes]
rs2901633	0.96[EUR][1000 genomes]
rs2901634	0.95[EUR][1000 genomes]
rs3740380	0.93[EUR][1000 genomes]
rs4284324	0.97[ASN][1000 genomes]
rs4417182	0.92[EUR][1000 genomes]
rs4508117	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933244	0.80[EUR][1000 genomes]
rs4933750	0.80[EUR][1000 genomes]
rs55944050	0.93[EUR][1000 genomes]
rs6583845	0.80[EUR][1000 genomes]
rs7068012	0.81[EUR][1000 genomes]
rs7068232	0.90[ASN][1000 genomes]
rs7078801	0.81[EUR][1000 genomes]
rs7081789	0.80[EUR][1000 genomes]
rs7087174	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095772	0.82[EUR][1000 genomes]
rs7097943	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7904552	0.95[EUR][1000 genomes]
rs7906224	0.95[EUR][1000 genomes]
rs7907142	0.84[EUR][1000 genomes]
rs7908179	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7910006	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7913949	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915463	0.82[EUR][1000 genomes]
rs7916038	0.91[EUR][1000 genomes]
rs7919095	0.81[EUR][1000 genomes]
rs7919589	0.82[EUR][1000 genomes]
rs7923502	0.80[EUR][1000 genomes]
rs9633694	0.90[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94614800	Weak transcription	Lung	lung
2	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
3	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
4	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94610200-94614400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94610200-94614600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:94610600-94614200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:94611000-94615400	Weak transcription	HUVEC	blood vessel
9	chr10:94614000-94614400	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links