Variant report

Variant	rs6583845
Chromosome Location	chr10:94656604-94656605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:
2	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509647	0.95[EUR][1000 genomes]
rs10882118	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs10882121	0.82[EUR][1000 genomes]
rs10882122	0.82[EUR][1000 genomes]
rs10882133	0.86[EUR][1000 genomes]
rs10882134	0.81[EUR][1000 genomes]
rs10882137	0.84[EUR][1000 genomes]
rs10882138	0.86[EUR][1000 genomes]
rs11187192	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187193	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187197	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11187212	0.92[EUR][1000 genomes]
rs11187226	0.83[EUR][1000 genomes]
rs12769058	0.84[EUR][1000 genomes]
rs1998861	0.86[EUR][1000 genomes]
rs2094231	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2422060	0.81[EUR][1000 genomes]
rs2901633	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2901634	0.83[EUR][1000 genomes]
rs3740380	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4417182	0.80[EUR][1000 genomes]
rs4508117	0.84[EUR][1000 genomes]
rs4919312	0.84[EUR][1000 genomes]
rs4933244	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933748	0.80[EUR][1000 genomes]
rs4933750	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933755	0.91[EUR][1000 genomes]
rs55944050	0.86[EUR][1000 genomes]
rs6583850	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6583852	0.95[EUR][1000 genomes]
rs7068012	0.97[EUR][1000 genomes]
rs7069010	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7078801	0.97[EUR][1000 genomes]
rs7081789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085308	0.92[EUR][1000 genomes]
rs7087174	0.82[EUR][1000 genomes]
rs7094393	0.92[EUR][1000 genomes]
rs7095772	0.98[EUR][1000 genomes]
rs7097943	0.85[EUR][1000 genomes]
rs7904552	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7906224	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7910006	0.82[EUR][1000 genomes]
rs7913949	0.81[EUR][1000 genomes]
rs7914571	0.92[EUR][1000 genomes]
rs7915463	0.98[EUR][1000 genomes]
rs7919095	0.97[EUR][1000 genomes]
rs7919589	0.98[EUR][1000 genomes]
rs7923502	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
3	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
7	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
9	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
10	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
13	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
14	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
15	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:94652600-94656800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:94652600-94657000	Weak transcription	Lung	lung
18	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:94652600-94663800	Weak transcription	Liver	Liver
21	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
22	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
23	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
24	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
27	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
28	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
29	chr10:94652600-94718000	Weak transcription	Ovary	ovary
30	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
31	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
34	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:94653000-94656800	Weak transcription	Dnd41	blood
36	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
37	chr10:94653200-94656800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr10:94653200-94662200	Weak transcription	HepG2	liver
39	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
40	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
41	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
42	chr10:94654400-94660600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr10:94655000-94658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94655000-94658800	Weak transcription	A549	lung
47	chr10:94655000-94660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:94655200-94656800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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