Variant report

Variant	rs6583852
Chromosome Location	chr10:94712814-94712815
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94711041..94712719-chr10:94712728..94715075,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10509647	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10748585	0.97[ASN][1000 genomes]
rs10786058	0.97[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10786060	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10786061	0.97[ASN][1000 genomes]
rs10786063	0.97[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882118	0.92[CEU][hapmap]
rs10882121	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10882122	0.80[EUR][1000 genomes]
rs10882123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882126	0.97[ASN][1000 genomes]
rs10882127	0.97[ASN][1000 genomes]
rs10882129	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882130	0.96[ASN][1000 genomes]
rs10882132	0.90[ASN][1000 genomes]
rs10882133	0.85[EUR][1000 genomes]
rs10882134	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10882135	0.87[ASN][1000 genomes]
rs10882136	0.88[ASN][1000 genomes]
rs10882137	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882138	0.85[EUR][1000 genomes]
rs11187186	0.83[CEU][hapmap]
rs11187192	0.80[EUR][1000 genomes]
rs11187193	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11187197	0.80[EUR][1000 genomes]
rs11187209	0.97[ASN][1000 genomes]
rs11187212	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11187226	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11516919	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12251276	0.84[ASN][1000 genomes]
rs12769058	0.82[EUR][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1987017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998861	0.85[EUR][1000 genomes]
rs2031616	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2094231	0.96[EUR][1000 genomes]
rs2274374	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2490739	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2490741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2901634	0.92[CEU][hapmap]
rs3740380	0.83[CEU][hapmap]
rs4508117	0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs4917670	0.84[ASN][1000 genomes]
rs4918435	0.88[ASN][1000 genomes]
rs4919312	0.83[EUR][1000 genomes]
rs4933244	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs4933245	0.97[ASN][1000 genomes]
rs4933246	0.97[ASN][1000 genomes]
rs4933750	0.95[EUR][1000 genomes]
rs4933751	0.97[ASN][1000 genomes]
rs4933753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4933754	0.97[ASN][1000 genomes]
rs4933755	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4933756	0.98[ASN][1000 genomes]
rs55944050	0.82[EUR][1000 genomes]
rs6583845	0.95[EUR][1000 genomes]
rs6583850	0.96[EUR][1000 genomes]
rs7068012	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7068232	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7069010	0.92[EUR][1000 genomes]
rs7078801	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7081789	0.95[EUR][1000 genomes]
rs7082214	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7085308	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087174	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7094393	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7095772	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7097943	0.83[EUR][1000 genomes]
rs7904552	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7906224	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs7907142	0.83[CEU][hapmap]
rs7908826	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7910006	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7914459	0.95[ASN][1000 genomes]
rs7914571	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7915463	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916038	0.83[CEU][hapmap]
rs7919095	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7919589	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7923502	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs8211	0.92[CHB][hapmap]
rs835238	1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs835247	0.82[EUR][1000 genomes]
rs9633694	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9633696	0.96[ASN][1000 genomes]
rs9645558	0.98[ASN][1000 genomes]
rs980203	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94718000	Weak transcription	Ovary	ovary
3	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
4	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
5	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
6	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
9	chr10:94658600-94725800	Weak transcription	Lung	lung
10	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
13	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:94674800-94724600	Weak transcription	HSMM	muscle
15	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
16	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr10:94687400-94724200	Weak transcription	NHLF	lung
20	chr10:94687600-94713200	Weak transcription	Brain Substantia Nigra	brain
21	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
22	chr10:94689800-94714800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr10:94689800-94724600	Weak transcription	A549	lung
24	chr10:94690000-94717600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:94690000-94730000	Weak transcription	Placenta	Placenta
26	chr10:94692200-94717800	Weak transcription	Brain Germinal Matrix	brain
27	chr10:94692800-94721800	Strong transcription	HUVEC	blood vessel
28	chr10:94692800-94724400	Weak transcription	Small Intestine	intestine
29	chr10:94694400-94714600	Weak transcription	HepG2	liver
30	chr10:94699000-94717400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:94699200-94721600	Weak transcription	Fetal Intestine Large	intestine
32	chr10:94699400-94728600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr10:94699800-94714600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:94699800-94722800	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr10:94700000-94723000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:94700400-94722800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr10:94701200-94715800	Weak transcription	Brain Hippocampus Middle	brain
38	chr10:94701400-94720600	Weak transcription	Fetal Kidney	kidney
39	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
40	chr10:94704000-94718400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr10:94704400-94717800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:94705600-94716400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:94706400-94713000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr10:94706600-94714800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
47	chr10:94706800-94717400	Strong transcription	Dnd41	blood
48	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
50	chr10:94708600-94713400	Strong transcription	Cortex derived primary cultured neurospheres	brain

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