Variant report

Variant	rs7916038
Chromosome Location	chr10:94593407-94593408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr10:94593070-94593409	K562	blood:	n/a	n/a
2	POLR2A	chr10:94592790-94593761	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr10:94592571-94595079	HUVEC	blood vessel:	n/a	n/a
4	CEBPB	chr10:94593238-94593499	Hela-S3	cervix:	n/a	n/a
5	GATA1	chr10:94592938-94593950	PBDE	blood:	n/a	n/a
6	MYC	chr10:94592893-94593433	K562	blood:	n/a	n/a
7	USF2	chr10:94593097-94593411	Hela-S3	cervix:	n/a	chr10:94593237-94593248

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94447540..94449065-chr10:94592655..94594227,2	K562	blood:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10748583	0.91[ASN][1000 genomes]
rs10882118	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882121	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs10882122	0.92[EUR][1000 genomes]
rs11187186	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11187192	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187193	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11187197	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11516919	0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs12769058	0.92[EUR][1000 genomes]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1964154	0.87[ASN][1000 genomes]
rs2422060	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901633	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901634	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740380	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417182	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508117	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs4933244	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs4933748	0.91[EUR][1000 genomes]
rs55944050	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6583847	1.00[CHB][hapmap]
rs7081888	1.00[CHB][hapmap]
rs7087174	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7095772	0.85[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap]
rs7097943	0.91[EUR][1000 genomes]
rs7904552	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7906224	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.96[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7907142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908179	0.88[EUR][1000 genomes]
rs7910006	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs7911519	0.86[EUR][1000 genomes]
rs7913949	0.94[EUR][1000 genomes]
rs7914571	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs7915463	0.85[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap]
rs7923502	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap]
rs835238	0.84[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94589000-94598000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:94589400-94599200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:94591000-94593800	Weak transcription	Ovary	ovary
4	chr10:94591000-94598800	Weak transcription	Right Atrium	heart
5	chr10:94591600-94593600	Weak transcription	Adipose Nuclei	Adipose
6	chr10:94591600-94597000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:94592600-94593800	Flanking Active TSS	HUVEC	blood vessel
11	chr10:94592800-94593600	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr10:94592800-94593800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr10:94592800-94594000	Flanking Active TSS	K562	blood
14	chr10:94592800-94594200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:94592800-94594200	Enhancers	HSMMtube	muscle
16	chr10:94592800-94594400	Enhancers	HSMM	muscle
17	chr10:94592800-94596000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:94593000-94594000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr10:94593000-94594600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:94593000-94597200	Weak transcription	Primary T cells from cord blood	blood
21	chr10:94593000-94597200	Weak transcription	Placenta	Placenta
22	chr10:94593200-94594000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:94593200-94595400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:94593200-94596000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:94593200-94596200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr10:94593200-94597000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:94593400-94594200	Weak transcription	Psoas Muscle	Psoas
28	chr10:94593400-94598600	Weak transcription	Lung	lung

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