Variant report

Variant	rs11187186
Chromosome Location	chr10:94586028-94586029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:94585852-94586028	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:94585721..94590083-chr10:94591817..94595632,6	K562	blood:
2	chr10:94459652..94461340-chr10:94585180..94587731,2	K562	blood:
3	chr10:94584595..94586955-chr10:94607472..94609011,2	MCF-7	breast:

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10748583	0.94[ASN][1000 genomes]
rs10882118	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882121	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs10882122	0.86[EUR][1000 genomes]
rs11187192	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187193	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187197	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11516919	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs12769058	0.85[EUR][1000 genomes]
rs1409385	1.00[CHB][hapmap]
rs1409386	1.00[CHB][hapmap]
rs1964154	0.84[ASN][1000 genomes]
rs2422060	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901633	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901634	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3740380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4417182	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4508117	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs4933244	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs4933748	0.84[EUR][1000 genomes]
rs55944050	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6583847	1.00[CHB][hapmap]
rs7081888	1.00[CHB][hapmap]
rs7087174	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7095772	0.85[CEU][hapmap]
rs7097943	0.84[EUR][1000 genomes]
rs7904552	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7906224	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7907142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908179	0.81[EUR][1000 genomes]
rs7910006	0.85[CEU][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs7911519	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7913949	0.88[EUR][1000 genomes]
rs7914571	0.96[CEU][hapmap]
rs7915463	0.85[CEU][hapmap]
rs7916038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7923502	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs835238	0.84[CEU][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94581600-94592800	Weak transcription	Lung	lung
2	chr10:94582400-94586200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:94582600-94590400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:94582800-94586600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:94582800-94586600	Weak transcription	Left Ventricle	heart
6	chr10:94582800-94589000	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:94582800-94589200	Weak transcription	Spleen	Spleen
8	chr10:94582800-94592800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:94583000-94590400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:94585200-94586200	Enhancers	A549	lung
11	chr10:94585400-94586200	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:94585400-94586400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:94585400-94586400	Enhancers	HepG2	liver
14	chr10:94585400-94586400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:94585400-94586600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:94585400-94588400	Enhancers	HUVEC	blood vessel
17	chr10:94585400-94588600	Enhancers	K562	blood
18	chr10:94585600-94589200	Weak transcription	Right Atrium	heart
19	chr10:94585600-94593000	Weak transcription	Psoas Muscle	Psoas
20	chr10:94585800-94586800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr10:94585800-94587200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:94586000-94586800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:94586000-94586800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:94586000-94586800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links