Variant report

Variant	rs12769058
Chromosome Location	chr10:94631922-94631923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94620024..94623190-chr10:94629225..94632349,3	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10509647	0.82[EUR][1000 genomes]
rs10748584	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10786056	0.97[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786060	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882115	0.84[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10882118	0.96[CEU][hapmap];0.81[YRI][hapmap];0.97[EUR][1000 genomes]
rs10882120	0.94[ASN][1000 genomes]
rs10882121	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882123	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10882125	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882129	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11187186	0.85[CEU][hapmap];0.80[YRI][hapmap];0.85[EUR][1000 genomes]
rs11187192	0.98[EUR][1000 genomes]
rs11187193	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs11187197	0.98[EUR][1000 genomes]
rs11516919	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1967817	0.97[ASN][1000 genomes]
rs1987017	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2094231	0.80[EUR][1000 genomes]
rs2246696	0.91[ASN][1000 genomes]
rs2422060	0.94[EUR][1000 genomes]
rs2490736	0.92[ASN][1000 genomes]
rs2490739	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2490741	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2901633	0.97[EUR][1000 genomes]
rs2901634	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs3740380	0.84[ASW][hapmap];0.85[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.94[EUR][1000 genomes]
rs4284324	0.93[ASN][1000 genomes]
rs4417182	0.93[EUR][1000 genomes]
rs4508117	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933244	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4933748	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933750	0.84[EUR][1000 genomes]
rs4933753	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs55944050	0.97[EUR][1000 genomes]
rs6583845	0.84[EUR][1000 genomes]
rs6583850	0.82[EUR][1000 genomes]
rs6583852	0.82[EUR][1000 genomes]
rs7068012	0.84[EUR][1000 genomes]
rs7068232	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7078801	0.84[EUR][1000 genomes]
rs7081789	0.84[EUR][1000 genomes]
rs7087174	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7095772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7097943	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7904552	0.96[CEU][hapmap];0.80[YRI][hapmap];0.98[EUR][1000 genomes]
rs7906224	0.84[ASW][hapmap];0.96[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[EUR][1000 genomes]
rs7907142	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs7908179	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7910006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7911519	0.82[EUR][1000 genomes]
rs7913949	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs7915463	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes]
rs7916038	0.84[ASW][hapmap];0.85[CEU][hapmap];0.92[GIH][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.92[EUR][1000 genomes]
rs7919095	0.84[EUR][1000 genomes]
rs7919589	0.85[EUR][1000 genomes]
rs7923502	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs8211	0.93[CHB][hapmap]
rs835238	1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs9633694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94619800-94632800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:94622400-94632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:94624600-94632600	Weak transcription	Primary T cells from cord blood	blood
6	chr10:94624600-94632600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:94624600-94633000	Weak transcription	Primary B cells from cord blood	blood
8	chr10:94624800-94632600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:94627200-94636000	Weak transcription	K562	blood
10	chr10:94627400-94633000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:94628800-94632600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:94630000-94632800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:94630400-94632200	Enhancers	HUVEC	blood vessel
14	chr10:94631200-94632200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:94631200-94632600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:94631400-94632600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr10:94631800-94632000	Enhancers	A549	lung

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