Variant report

Variant	rs1967817
Chromosome Location	chr10:94645321-94645322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94643437..94646429-chr10:94647651..94649627,2	K562	blood:
2	chr10:94644359..94645676-chr10:94799255..94800206,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10748584	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786056	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786058	0.82[EUR][1000 genomes]
rs10786059	0.90[AFR][1000 genomes]
rs10882115	0.84[ASN][1000 genomes]
rs10882117	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882120	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882121	0.92[ASN][1000 genomes]
rs10882122	0.92[ASN][1000 genomes]
rs10882123	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882126	0.95[AFR][1000 genomes]
rs10882127	0.87[AFR][1000 genomes]
rs11187209	0.95[AFR][1000 genomes]
rs11516919	0.92[ASN][1000 genomes]
rs12769058	0.97[ASN][1000 genomes]
rs1964154	0.87[EUR][1000 genomes]
rs1987017	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246696	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490736	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490739	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490741	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4284324	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4508117	0.98[ASN][1000 genomes]
rs4933240	0.85[EUR][1000 genomes]
rs4933748	0.90[ASN][1000 genomes]
rs7068232	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087174	0.92[ASN][1000 genomes]
rs7097943	0.98[ASN][1000 genomes]
rs7908179	0.92[ASN][1000 genomes]
rs7910006	0.92[ASN][1000 genomes]
rs7913949	0.92[ASN][1000 genomes]
rs9633694	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645558	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94624400-94646000	Weak transcription	Fetal Intestine Small	intestine
3	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
5	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
7	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
8	chr10:94640200-94646000	Weak transcription	HUVEC	blood vessel
9	chr10:94640200-94647600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr10:94641200-94646200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr10:94641800-94646200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:94644200-94646000	Enhancers	A549	lung
19	chr10:94644400-94647400	Weak transcription	Fetal Heart	heart
20	chr10:94644600-94646200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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