Variant report

Variant	rs10882120
Chromosome Location	chr10:94621292-94621293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94607148..94609834-chr10:94620974..94623254,3	K562	blood:
2	chr10:94618505..94620451-chr10:94621088..94623863,2	K562	blood:
3	chr10:94607215..94609931-chr10:94617680..94621833,3	MCF-7	breast:
4	chr10:94620024..94623190-chr10:94629225..94632349,3	MCF-7	breast:
5	chr10:94620976..94622865-chr10:94624489..94626160,2	K562	blood:
6	chr10:94351303..94353239-chr10:94619055..94621307,2	MCF-7	breast:
7	chr10:94607148..94609152-chr10:94620974..94623254,2	K562	blood:
8	chr10:94602842..94604573-chr10:94619826..94622814,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10748583	0.80[EUR][1000 genomes]
rs10748584	1.00[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10786056	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786058	0.81[EUR][1000 genomes]
rs10786059	0.95[CEU][hapmap]
rs10786060	0.94[CEU][hapmap]
rs10882115	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10882117	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882121	0.98[ASN][1000 genomes]
rs10882122	0.98[ASN][1000 genomes]
rs10882123	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882125	0.94[CEU][hapmap]
rs10882129	0.94[CEU][hapmap]
rs11516919	0.98[ASN][1000 genomes]
rs12769058	0.94[ASN][1000 genomes]
rs1571034	0.83[CEU][hapmap]
rs1964154	0.86[EUR][1000 genomes]
rs1967817	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1987017	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246696	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2490736	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490739	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490741	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4284324	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4508117	0.92[ASN][1000 genomes]
rs4933240	0.87[EUR][1000 genomes]
rs4933744	0.89[CEU][hapmap]
rs4933748	0.94[ASN][1000 genomes]
rs4933753	0.94[CEU][hapmap]
rs7068232	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087174	0.96[ASN][1000 genomes]
rs7097943	0.92[ASN][1000 genomes]
rs7908179	0.96[ASN][1000 genomes]
rs7910006	0.98[ASN][1000 genomes]
rs7913949	0.96[ASN][1000 genomes]
rs9633694	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
2	chr10:94616800-94622000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:94618600-94624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:94619000-94622800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:94619400-94624400	Weak transcription	Primary T cells from cord blood	blood
6	chr10:94619600-94622000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:94619600-94624200	Weak transcription	HUVEC	blood vessel
8	chr10:94619800-94622000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:94619800-94624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:94619800-94624200	Weak transcription	Dnd41	blood
11	chr10:94619800-94626800	Weak transcription	K562	blood
12	chr10:94619800-94627000	Weak transcription	A549	lung
13	chr10:94619800-94628800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr10:94619800-94632800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr10:94620000-94624000	Weak transcription	Primary B cells from cord blood	blood
16	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:94621000-94621400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:94621000-94621400	Enhancers	Pancreas	Pancrea

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