Variant report

Variant	rs1964154
Chromosome Location	chr10:94651396-94651397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94646967..94649814-chr10:94651254..94653769,2	K562	blood:
2	chr10:94650650..94651477-chr10:94831181..94832053,2	MCF-7	breast:
3	chr10:94650712..94651544-chr10:95194677..95195247,2	MCF-7	breast:
4	chr10:94646967..94648497-chr10:94650916..94652754,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10748583	0.85[ASN][1000 genomes]
rs10748584	0.87[EUR][1000 genomes]
rs10786056	0.90[EUR][1000 genomes]
rs10882117	0.86[EUR][1000 genomes]
rs10882118	0.87[ASN][1000 genomes]
rs10882120	0.86[EUR][1000 genomes]
rs10882123	0.88[EUR][1000 genomes]
rs11187186	0.84[ASN][1000 genomes]
rs11187192	0.94[ASN][1000 genomes]
rs11187193	0.94[ASN][1000 genomes]
rs11187197	0.97[ASN][1000 genomes]
rs1967817	0.87[EUR][1000 genomes]
rs1987017	0.88[EUR][1000 genomes]
rs2246696	0.81[EUR][1000 genomes]
rs2422060	0.87[ASN][1000 genomes]
rs2490736	0.85[EUR][1000 genomes]
rs2490739	0.84[EUR][1000 genomes]
rs2490741	0.84[EUR][1000 genomes]
rs2901633	0.87[ASN][1000 genomes]
rs2901634	0.87[ASN][1000 genomes]
rs3740380	0.87[ASN][1000 genomes]
rs4284324	0.86[EUR][1000 genomes]
rs4417182	0.87[ASN][1000 genomes]
rs55944050	0.97[ASN][1000 genomes]
rs7068232	0.88[EUR][1000 genomes]
rs7904552	0.97[ASN][1000 genomes]
rs7906224	0.97[ASN][1000 genomes]
rs7907142	0.84[ASN][1000 genomes]
rs7916038	0.87[ASN][1000 genomes]
rs9633694	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
5	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
6	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
14	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
15	chr10:94646600-94651400	Weak transcription	HepG2	liver
16	chr10:94646600-94651600	Weak transcription	NH-A	brain
17	chr10:94646600-94651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:94646600-94651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94646600-94651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr10:94646600-94651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:94646600-94651800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr10:94646600-94651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:94647800-94651800	Weak transcription	Fetal Heart	heart
29	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr10:94648400-94652000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr10:94648400-94652000	Weak transcription	Brain Angular Gyrus	brain
32	chr10:94649400-94652200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr10:94649400-94654000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:94649800-94652000	Weak transcription	Pancreas	Pancrea
35	chr10:94649800-94652200	Weak transcription	Lung	lung
36	chr10:94650000-94651800	Enhancers	A549	lung
37	chr10:94650200-94652400	Enhancers	HUVEC	blood vessel
38	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:94650400-94655200	Enhancers	Fetal Intestine Large	intestine
40	chr10:94650600-94651800	Enhancers	Hela-S3	cervix
41	chr10:94650600-94652600	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr10:94650600-94654800	Enhancers	HMEC	breast
43	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
44	chr10:94650800-94651800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:94650800-94652000	Weak transcription	Psoas Muscle	Psoas
46	chr10:94650800-94654600	Enhancers	NHEK	skin
47	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
48	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr10:94651000-94652000	Weak transcription	Small Intestine	intestine

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