Variant report

Variant	rs2490736
Chromosome Location	chr10:94599468-94599469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94456016..94458040-chr10:94597968..94600497,2	K562	blood:
2	chr10:94594344..94597237-chr10:94597831..94600212,2	MCF-7	breast:
3	chr10:94450797..94452368-chr10:94598922..94601266,2	K562	blood:

Variant related genes	Relation type
ENSG00000152804	Chromatin interaction
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10748583	0.84[EUR][1000 genomes]
rs10748584	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786056	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10786058	0.81[EUR][1000 genomes]
rs10882115	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882117	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10882120	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882121	0.97[ASN][1000 genomes]
rs10882122	0.97[ASN][1000 genomes]
rs10882123	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11516919	0.97[ASN][1000 genomes]
rs12769058	0.92[ASN][1000 genomes]
rs1964154	0.85[EUR][1000 genomes]
rs1967817	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1987017	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2246696	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2490739	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2490741	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4284324	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4508117	0.91[ASN][1000 genomes]
rs4933240	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4933748	0.96[ASN][1000 genomes]
rs7068232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7087174	0.97[ASN][1000 genomes]
rs7097943	0.91[ASN][1000 genomes]
rs7908179	0.97[ASN][1000 genomes]
rs7910006	0.97[ASN][1000 genomes]
rs7913949	0.97[ASN][1000 genomes]
rs9633694	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94591600-94602800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:94591600-94602800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:94592200-94605600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr10:94596800-94602400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:94596800-94604400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
7	chr10:94597000-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94597200-94599600	Enhancers	Fetal Muscle Leg	muscle
9	chr10:94597200-94599800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:94597400-94602600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:94598000-94599600	Enhancers	Psoas Muscle	Psoas
12	chr10:94598200-94602800	Weak transcription	Dnd41	blood
13	chr10:94598400-94599600	Enhancers	Left Ventricle	heart
14	chr10:94598600-94599600	Enhancers	Fetal Muscle Trunk	muscle
15	chr10:94598600-94599600	Enhancers	Lung	lung
16	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
17	chr10:94598800-94599600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:94598800-94599600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:94598800-94599600	Enhancers	Pancreas	Pancrea
20	chr10:94598800-94599600	Enhancers	Right Atrium	heart
21	chr10:94598800-94599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:94599000-94599600	Enhancers	Fetal Kidney	kidney
23	chr10:94599000-94599600	Enhancers	Ovary	ovary
24	chr10:94599000-94599600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr10:94599000-94599600	Enhancers	Hela-S3	cervix
26	chr10:94599000-94599600	Enhancers	NHLF	lung
27	chr10:94599200-94599600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:94599200-94600000	Enhancers	A549	lung
29	chr10:94599200-94603000	Weak transcription	Placenta	Placenta
30	chr10:94599400-94599600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
31	chr10:94599400-94599600	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:94599400-94599600	Enhancers	HepG2	liver
33	chr10:94599400-94599600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
34	chr10:94599400-94599600	Flanking Active TSS	K562	blood
35	chr10:94599400-94602200	Weak transcription	Adipose Nuclei	Adipose
36	chr10:94599400-94607200	Weak transcription	Osteobl	bone
37	chr10:94599400-94607400	Weak transcription	Spleen	Spleen

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