Variant report

Variant	rs4284324
Chromosome Location	chr10:94606158-94606159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr10:94605617-94606160	HL-60	blood:	n/a	n/a
2	POLR2A	chr10:94605632-94606184	HL-60	blood:	n/a	n/a
3	POLR2A	chr10:94605616-94609119	HUVEC	blood vessel:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94351135..94353608-chr10:94605711..94608172,2	K562	blood:
2	chr10:94448193..94452899-chr10:94604769..94609293,6	K562	blood:
3	chr10:94449811..94452513-chr10:94604477..94606269,2	K562	blood:
4	chr10:94604476..94607331-chr10:94608009..94611387,4	K562	blood:

No data

Variant related genes	Relation type
EXOC6	TF binding region
ENSG00000138190	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10748583	0.83[EUR][1000 genomes]
rs10748584	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786056	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10786058	0.82[EUR][1000 genomes]
rs10882115	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882117	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882120	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882121	0.96[ASN][1000 genomes]
rs10882122	0.96[ASN][1000 genomes]
rs10882123	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882126	0.83[AFR][1000 genomes]
rs11187209	0.83[AFR][1000 genomes]
rs11516919	0.96[ASN][1000 genomes]
rs12769058	0.93[ASN][1000 genomes]
rs1964154	0.86[EUR][1000 genomes]
rs1967817	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1987017	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2246696	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2490736	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2490739	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2490741	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4508117	0.92[ASN][1000 genomes]
rs4933240	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4933748	0.97[ASN][1000 genomes]
rs7068232	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7087174	0.98[ASN][1000 genomes]
rs7097943	0.92[ASN][1000 genomes]
rs7908179	0.98[ASN][1000 genomes]
rs7910006	0.96[ASN][1000 genomes]
rs7913949	0.98[ASN][1000 genomes]
rs9633694	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94596800-94607800	Weak transcription	HSMMtube	muscle
2	chr10:94598600-94607200	Weak transcription	Primary T cells from cord blood	blood
3	chr10:94599400-94607200	Weak transcription	Osteobl	bone
4	chr10:94599400-94607400	Weak transcription	Spleen	Spleen
5	chr10:94599600-94606600	Weak transcription	Lung	lung
6	chr10:94599600-94607600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:94600600-94607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr10:94602600-94607600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr10:94602800-94607400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:94603000-94607000	Weak transcription	Fetal Intestine Large	intestine
11	chr10:94603000-94607000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:94603200-94606400	Weak transcription	Hela-S3	cervix
13	chr10:94603200-94607200	Weak transcription	Liver	Liver
14	chr10:94603200-94607400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:94603200-94607400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr10:94603400-94607200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:94603400-94607200	Weak transcription	A549	lung
18	chr10:94603400-94607400	Weak transcription	Adipose Nuclei	Adipose
19	chr10:94604000-94606800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr10:94604200-94607200	Weak transcription	Placenta	Placenta
21	chr10:94604200-94607400	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:94604200-94607400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:94604200-94607600	Weak transcription	Brain Hippocampus Middle	brain
24	chr10:94605200-94606800	Strong transcription	K562	blood
25	chr10:94605400-94608000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:94605600-94606600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:94605600-94607600	Enhancers	Primary B cells from peripheral blood	blood
30	chr10:94605800-94606200	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr10:94605800-94606200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr10:94605800-94606600	Flanking Active TSS	GM12878-XiMat	blood
33	chr10:94605800-94606800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:94605800-94607200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr10:94605800-94607200	Genic enhancers	HUVEC	blood vessel
36	chr10:94605800-94607400	Enhancers	HepG2	liver
37	chr10:94606000-94606200	Enhancers	Fetal Thymus	thymus
38	chr10:94606000-94606200	Enhancers	Thymus	Thymus
39	chr10:94606000-94607200	Enhancers	Primary B cells from cord blood	blood

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