Variant report

Variant	rs7097943
Chromosome Location	chr10:94649425-94649426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94623164..94625543-chr10:94648758..94650960,2	K562	blood:
2	chr10:94643437..94646429-chr10:94647651..94649627,2	K562	blood:
3	chr10:94646967..94649814-chr10:94651254..94653769,2	K562	blood:
4	chr10:94637242..94640461-chr10:94646204..94649459,3	K562	blood:

Variant related genes	Relation type
ENSG00000225118	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10509647	0.83[EUR][1000 genomes]
rs10748584	0.93[ASN][1000 genomes]
rs10786056	0.98[ASN][1000 genomes]
rs10882115	0.83[ASN][1000 genomes]
rs10882117	0.92[ASN][1000 genomes]
rs10882118	0.96[EUR][1000 genomes]
rs10882120	0.92[ASN][1000 genomes]
rs10882121	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882122	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882123	0.98[ASN][1000 genomes]
rs11187186	0.84[EUR][1000 genomes]
rs11187192	0.97[EUR][1000 genomes]
rs11187193	0.97[EUR][1000 genomes]
rs11187197	0.97[EUR][1000 genomes]
rs11187212	0.80[EUR][1000 genomes]
rs11516919	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12769058	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1967817	0.98[ASN][1000 genomes]
rs1987017	0.92[ASN][1000 genomes]
rs2094231	0.81[EUR][1000 genomes]
rs2246696	0.89[ASN][1000 genomes]
rs2422060	0.93[EUR][1000 genomes]
rs2490736	0.91[ASN][1000 genomes]
rs2490739	0.91[ASN][1000 genomes]
rs2490741	0.92[ASN][1000 genomes]
rs2901633	0.96[EUR][1000 genomes]
rs2901634	0.95[EUR][1000 genomes]
rs3740380	0.93[EUR][1000 genomes]
rs4284324	0.92[ASN][1000 genomes]
rs4417182	0.92[EUR][1000 genomes]
rs4508117	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933244	0.85[EUR][1000 genomes]
rs4933748	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4933750	0.85[EUR][1000 genomes]
rs55944050	0.98[EUR][1000 genomes]
rs6583845	0.85[EUR][1000 genomes]
rs6583850	0.84[EUR][1000 genomes]
rs6583852	0.83[EUR][1000 genomes]
rs7068012	0.85[EUR][1000 genomes]
rs7068232	0.98[ASN][1000 genomes]
rs7078801	0.85[EUR][1000 genomes]
rs7081789	0.85[EUR][1000 genomes]
rs7085308	0.80[EUR][1000 genomes]
rs7087174	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7094393	0.80[EUR][1000 genomes]
rs7095772	0.86[EUR][1000 genomes]
rs7904552	0.97[EUR][1000 genomes]
rs7906224	0.97[EUR][1000 genomes]
rs7907142	0.84[EUR][1000 genomes]
rs7908179	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7910006	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7911519	0.81[EUR][1000 genomes]
rs7913949	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7914571	0.80[EUR][1000 genomes]
rs7915463	0.86[EUR][1000 genomes]
rs7916038	0.91[EUR][1000 genomes]
rs7919095	0.85[EUR][1000 genomes]
rs7919589	0.86[EUR][1000 genomes]
rs7923502	0.85[EUR][1000 genomes]
rs9633694	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94634800-94650400	Weak transcription	Psoas Muscle	Psoas
4	chr10:94637200-94651800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
6	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:94640800-94651600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:94641400-94651800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:94641800-94651800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
15	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
16	chr10:94646600-94650200	Weak transcription	K562	blood
17	chr10:94646600-94651400	Weak transcription	HepG2	liver
18	chr10:94646600-94651600	Weak transcription	NH-A	brain
19	chr10:94646600-94651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:94646600-94651800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:94646600-94651800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr10:94646600-94651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:94646600-94651800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:94646600-94651800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:94647800-94650400	Weak transcription	Fetal Intestine Large	intestine
31	chr10:94647800-94650800	Weak transcription	Fetal Intestine Small	intestine
32	chr10:94647800-94651800	Weak transcription	Fetal Heart	heart
33	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr10:94648200-94650600	Weak transcription	Hela-S3	cervix
35	chr10:94648400-94652000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr10:94648400-94652000	Weak transcription	Brain Angular Gyrus	brain
37	chr10:94648600-94650200	Weak transcription	HUVEC	blood vessel
38	chr10:94648800-94650800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr10:94649200-94649600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:94649200-94651200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr10:94649400-94650000	Weak transcription	A549	lung
42	chr10:94649400-94652200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr10:94649400-94654000	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links