Variant report

Variant	rs10786056
Chromosome Location	chr10:94651849-94651850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94646967..94649814-chr10:94651254..94653769,2	K562	blood:
2	chr10:94646967..94648497-chr10:94650916..94652754,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10748584	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748585	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10786058	0.85[EUR][1000 genomes]
rs10786059	0.81[EUR][1000 genomes]
rs10786060	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10786061	0.82[EUR][1000 genomes]
rs10786063	0.80[EUR][1000 genomes]
rs10882115	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10882117	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882120	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10882121	0.92[ASN][1000 genomes]
rs10882122	0.92[ASN][1000 genomes]
rs10882123	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882125	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10882126	0.81[EUR][1000 genomes]
rs10882127	0.82[EUR][1000 genomes]
rs10882129	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11187209	0.82[EUR][1000 genomes]
rs11516919	0.92[ASN][1000 genomes]
rs12769058	0.97[ASN][1000 genomes]
rs1964154	0.90[EUR][1000 genomes]
rs1967817	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1987017	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246696	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2490736	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490739	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2490741	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4284324	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4508117	0.98[ASN][1000 genomes]
rs4933240	0.86[EUR][1000 genomes]
rs4933245	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4933246	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4933748	0.90[ASN][1000 genomes]
rs4933751	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4933753	0.82[EUR][1000 genomes]
rs4933754	0.82[EUR][1000 genomes]
rs4933756	0.82[EUR][1000 genomes]
rs7068232	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087174	0.92[ASN][1000 genomes]
rs7097943	0.98[ASN][1000 genomes]
rs7908179	0.92[ASN][1000 genomes]
rs7910006	0.92[ASN][1000 genomes]
rs7913949	0.92[ASN][1000 genomes]
rs9633694	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633696	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9645558	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638400-94652000	Weak transcription	Right Atrium	heart
4	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
5	chr10:94640800-94655000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:94641000-94655000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr10:94641200-94652000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr10:94646200-94652000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:94646200-94652400	Weak transcription	Brain Anterior Caudate	brain
10	chr10:94646400-94652200	Weak transcription	Right Ventricle	heart
11	chr10:94646600-94652000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:94646600-94652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:94646600-94652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:94646600-94652000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:94646600-94652000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:94648400-94652000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:94648400-94652000	Weak transcription	Brain Angular Gyrus	brain
19	chr10:94649400-94652200	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr10:94649400-94654000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:94649800-94652000	Weak transcription	Pancreas	Pancrea
22	chr10:94649800-94652200	Weak transcription	Lung	lung
23	chr10:94650200-94652400	Enhancers	HUVEC	blood vessel
24	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:94650400-94655200	Enhancers	Fetal Intestine Large	intestine
26	chr10:94650600-94652600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:94650600-94654800	Enhancers	HMEC	breast
28	chr10:94650600-94656200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:94650800-94652000	Weak transcription	Psoas Muscle	Psoas
30	chr10:94650800-94654600	Enhancers	NHEK	skin
31	chr10:94650800-94655600	Enhancers	Fetal Intestine Small	intestine
32	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:94651000-94652000	Weak transcription	Small Intestine	intestine
35	chr10:94651400-94652000	Weak transcription	Aorta	Aorta
36	chr10:94651400-94652600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:94651400-94655000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:94651600-94652000	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:94651600-94652400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:94651600-94652600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:94651600-94652600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr10:94651600-94652600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr10:94651600-94652600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:94651600-94652600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:94651600-94652600	Enhancers	Liver	Liver
46	chr10:94651600-94652600	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:94651600-94652600	Enhancers	HSMMtube	muscle
48	chr10:94651600-94652600	Enhancers	K562	blood
49	chr10:94651600-94652600	Enhancers	NH-A	brain
50	chr10:94651600-94652600	Enhancers	NHDF-Ad	bronchial

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