Variant report

Variant	rs10882127
Chromosome Location	chr10:94673652-94673653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94673421..94675833-chr10:94685564..94687724,2	MCF-7	breast:
2	chr10:94672230..94674578-chr17:57915271..57917491,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10509647	0.97[ASN][1000 genomes]
rs10748585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786056	0.82[EUR][1000 genomes]
rs10786058	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786059	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786060	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786063	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882117	0.82[AFR][1000 genomes]
rs10882123	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10882125	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882129	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882130	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882132	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882135	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882136	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187209	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187212	0.98[ASN][1000 genomes]
rs12251276	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1571034	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1967817	0.87[AFR][1000 genomes]
rs1969905	0.87[EUR][1000 genomes]
rs1987017	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2274374	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917670	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918435	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933245	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933246	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933751	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933753	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933754	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933755	0.96[ASN][1000 genomes]
rs4933756	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583852	0.97[ASN][1000 genomes]
rs7068012	0.96[ASN][1000 genomes]
rs7068232	0.81[EUR][1000 genomes]
rs7078801	0.97[ASN][1000 genomes]
rs7085308	0.98[ASN][1000 genomes]
rs7094393	0.98[ASN][1000 genomes]
rs7095772	0.98[ASN][1000 genomes]
rs7914459	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	0.98[ASN][1000 genomes]
rs7915463	0.98[ASN][1000 genomes]
rs7919095	0.98[ASN][1000 genomes]
rs7919589	0.98[ASN][1000 genomes]
rs9633694	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9633696	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645558	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980203	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
2	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
3	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
4	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
7	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
8	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:94652600-94718000	Weak transcription	Ovary	ovary
10	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
11	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
13	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
14	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
19	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
20	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
21	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
30	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:94658600-94725800	Weak transcription	Lung	lung
32	chr10:94661800-94675800	Weak transcription	Thymus	Thymus
33	chr10:94661800-94688800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:94662400-94680000	Weak transcription	Fetal Brain Female	brain
35	chr10:94662400-94688400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:94662600-94680200	Weak transcription	A549	lung
37	chr10:94662600-94689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:94662800-94688200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:94663200-94674400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:94664200-94680600	Weak transcription	Liver	Liver
42	chr10:94664400-94675800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:94664400-94693800	Weak transcription	HepG2	liver
44	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:94667200-94680200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94667400-94675800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:94667400-94680200	Weak transcription	Fetal Intestine Large	intestine
48	chr10:94667400-94688000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:94667400-94688600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea

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