Variant report

Variant	rs7094393
Chromosome Location	chr10:94656941-94656942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:
2	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10509647	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10748584	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap]
rs10748585	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10786058	0.98[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10786060	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10786061	0.98[ASN][1000 genomes]
rs10786063	0.96[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882118	0.85[CEU][hapmap]
rs10882121	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs10882123	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882125	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10882126	0.98[ASN][1000 genomes]
rs10882127	0.98[ASN][1000 genomes]
rs10882129	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10882130	0.94[ASN][1000 genomes]
rs10882132	0.88[ASN][1000 genomes]
rs10882135	0.85[ASN][1000 genomes]
rs10882136	0.87[ASN][1000 genomes]
rs10882137	0.81[EUR][1000 genomes]
rs11187186	0.96[CEU][hapmap]
rs11187193	0.84[CEU][hapmap]
rs11187209	0.98[ASN][1000 genomes]
rs11187212	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187226	0.80[ASN][1000 genomes]
rs11516919	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs12251276	0.83[ASN][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1987017	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs2031616	0.87[EUR][1000 genomes]
rs2094231	0.91[EUR][1000 genomes]
rs2274374	0.97[ASN][1000 genomes]
rs2490739	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs2490741	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap]
rs2901634	0.85[CEU][hapmap]
rs3740380	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs4508117	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs4917670	0.82[ASN][1000 genomes]
rs4918435	0.87[ASN][1000 genomes]
rs4933244	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs4933245	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4933246	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4933750	0.92[EUR][1000 genomes]
rs4933751	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4933753	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4933754	0.98[ASN][1000 genomes]
rs4933755	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933756	0.97[ASN][1000 genomes]
rs6583845	0.92[EUR][1000 genomes]
rs6583850	0.91[EUR][1000 genomes]
rs6583852	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7068012	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7068232	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs7069010	0.83[EUR][1000 genomes]
rs7078801	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081789	0.92[EUR][1000 genomes]
rs7082214	0.87[EUR][1000 genomes]
rs7085308	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087174	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs7095772	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7097943	0.80[EUR][1000 genomes]
rs7904552	0.84[CEU][hapmap]
rs7906224	0.85[CEU][hapmap];0.85[GIH][hapmap];0.91[TSI][hapmap]
rs7907142	0.96[CEU][hapmap]
rs7908826	0.87[EUR][1000 genomes]
rs7910006	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs7914459	0.93[ASN][1000 genomes]
rs7914571	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7915463	0.89[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916038	0.96[CEU][hapmap];0.93[GIH][hapmap];0.91[TSI][hapmap]
rs7919095	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919589	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923502	0.85[CEU][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes]
rs8211	0.93[CHB][hapmap]
rs835238	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs835247	0.87[EUR][1000 genomes]
rs9633694	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs9633696	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9645558	0.97[ASN][1000 genomes]
rs980203	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
6	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
7	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
10	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
11	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
12	chr10:94652600-94657000	Weak transcription	Lung	lung
13	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:94652600-94663800	Weak transcription	Liver	Liver
16	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
17	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
18	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
19	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
23	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
24	chr10:94652600-94718000	Weak transcription	Ovary	ovary
25	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
26	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
29	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
31	chr10:94653200-94662200	Weak transcription	HepG2	liver
32	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
33	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
34	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
35	chr10:94654400-94660600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr10:94655000-94658600	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr10:94655000-94658800	Weak transcription	A549	lung
40	chr10:94655000-94660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr10:94655200-94658200	Weak transcription	Brain Substantia Nigra	brain
44	chr10:94655200-94659400	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:94655200-94661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
47	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
49	chr10:94655400-94657000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr10:94655400-94658400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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