Variant report

Variant	rs4933246
Chromosome Location	chr10:94689302-94689303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509647	0.97[ASN][1000 genomes]
rs10748584	0.83[AFR][1000 genomes]
rs10748585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786056	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10786058	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786059	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786060	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786061	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786063	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882123	0.81[EUR][1000 genomes]
rs10882125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882126	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882127	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882130	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882132	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882135	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882136	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187209	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187212	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12251276	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1571034	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1969905	0.87[EUR][1000 genomes]
rs1987017	0.81[EUR][1000 genomes]
rs2274374	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4917670	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918435	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933245	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933754	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933755	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4933756	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583852	0.97[ASN][1000 genomes]
rs7068012	0.96[ASN][1000 genomes]
rs7068232	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7078801	0.97[ASN][1000 genomes]
rs7085308	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7094393	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7095772	0.98[ASN][1000 genomes]
rs7914459	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7915463	0.98[ASN][1000 genomes]
rs7919095	0.98[ASN][1000 genomes]
rs7919589	0.98[ASN][1000 genomes]
rs9633694	0.82[EUR][1000 genomes]
rs9633696	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645558	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980203	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv467434	chr10:94668524-94725508	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv551940	chr10:94668524-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
2	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
3	chr10:94652600-94718000	Weak transcription	Ovary	ovary
4	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
5	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
7	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
8	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
11	chr10:94658600-94725800	Weak transcription	Lung	lung
12	chr10:94662600-94689400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:94664400-94693800	Weak transcription	HepG2	liver
15	chr10:94664600-94714600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
17	chr10:94672000-94716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:94674800-94724600	Weak transcription	HSMM	muscle
19	chr10:94675000-94708600	Weak transcription	K562	blood
20	chr10:94676400-94706400	Weak transcription	Thymus	Thymus
21	chr10:94679400-94706200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr10:94680600-94712800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:94680800-94708000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:94681000-94689600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:94681000-94707600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:94681000-94717000	Weak transcription	Brain Anterior Caudate	brain
27	chr10:94681600-94693600	Weak transcription	Fetal Intestine Small	intestine
28	chr10:94681600-94696200	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:94681600-94703600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr10:94683400-94724400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:94686400-94703600	Weak transcription	Fetal Brain Female	brain
32	chr10:94686600-94719600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:94687000-94703600	Weak transcription	Fetal Heart	heart
34	chr10:94687200-94689800	Strong transcription	Dnd41	blood
35	chr10:94687200-94694400	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:94687200-94700800	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:94687200-94718200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr10:94687400-94690000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:94687400-94690000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr10:94687400-94690400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:94687400-94692000	Strong transcription	HUVEC	blood vessel
42	chr10:94687400-94693200	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:94687400-94724200	Weak transcription	NHLF	lung
44	chr10:94687600-94690000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr10:94687600-94690000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr10:94687600-94713200	Weak transcription	Brain Substantia Nigra	brain
47	chr10:94688000-94690000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr10:94688000-94690000	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:94688000-94690000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:94688200-94689400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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