Variant report

Variant	rs10882132
Chromosome Location	chr10:94731003-94731004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94730886..94732779-chr10:94830239..94832619,2	K562	blood:
2	chr10:94723115..94725213-chr10:94730158..94733816,3	K562	blood:
3	chr10:94730900..94735005-chr10:94830086..94835564,6	K562	blood:

Variant related genes	Relation type
ENSG00000095596	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10509647	0.90[ASN][1000 genomes]
rs10748585	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786058	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786059	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10786060	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786061	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786063	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882125	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882126	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882127	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882129	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882130	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10882135	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10882136	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11187209	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11187212	0.88[ASN][1000 genomes]
rs11187226	0.88[AFR][1000 genomes]
rs12251276	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1571034	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1969905	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2031616	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2274374	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4917670	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918435	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933245	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933246	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933751	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933753	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933754	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933755	0.89[ASN][1000 genomes]
rs4933756	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583852	0.90[ASN][1000 genomes]
rs7068012	0.86[ASN][1000 genomes]
rs7078801	0.90[ASN][1000 genomes]
rs7082214	0.85[AFR][1000 genomes]
rs7085308	0.88[ASN][1000 genomes]
rs7094393	0.88[ASN][1000 genomes]
rs7095772	0.88[ASN][1000 genomes]
rs7908826	0.85[AFR][1000 genomes]
rs7914459	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	0.88[ASN][1000 genomes]
rs7915463	0.88[ASN][1000 genomes]
rs7919095	0.88[ASN][1000 genomes]
rs7919589	0.88[ASN][1000 genomes]
rs835238	0.83[AFR][1000 genomes]
rs835247	0.83[AFR][1000 genomes]
rs9633696	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9645558	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs980203	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
4	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:94667400-94733400	Weak transcription	Pancreas	Pancrea
6	chr10:94689200-94738000	Weak transcription	Fetal Thymus	thymus
7	chr10:94703000-94731800	Weak transcription	Spleen	Spleen
8	chr10:94704600-94731800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:94706600-94731600	Weak transcription	Hela-S3	cervix
10	chr10:94707400-94735400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:94708200-94732400	Weak transcription	Colon Smooth Muscle	Colon
12	chr10:94709000-94731800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:94709000-94735400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
16	chr10:94713200-94731600	Weak transcription	Fetal Intestine Small	intestine
17	chr10:94713200-94731800	Weak transcription	Psoas Muscle	Psoas
18	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:94713400-94732000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:94713400-94738600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:94714000-94731600	Weak transcription	Thymus	Thymus
22	chr10:94714200-94732200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:94714800-94732000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:94714800-94733200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr10:94715000-94732400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr10:94715600-94734800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:94716800-94731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr10:94718400-94733800	Weak transcription	Liver	Liver
29	chr10:94719800-94731600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:94720200-94731200	Weak transcription	Primary T cells from cord blood	blood
31	chr10:94720200-94732000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr10:94720200-94739200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:94722000-94732400	Weak transcription	Fetal Heart	heart
34	chr10:94722800-94733400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr10:94725600-94731800	Weak transcription	A549	lung
36	chr10:94725600-94734600	Weak transcription	Fetal Lung	lung
37	chr10:94728600-94731800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:94728600-94733000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:94728800-94732000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:94729000-94731800	Weak transcription	HepG2	liver
41	chr10:94729000-94733200	Strong transcription	Primary B cells from cord blood	blood
42	chr10:94729200-94731600	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:94729800-94731800	Strong transcription	Dnd41	blood
44	chr10:94729800-94734400	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr10:94729800-94735000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94730000-94735600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr10:94730200-94731800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:94730600-94731200	Weak transcription	Fetal Muscle Leg	muscle
49	chr10:94730800-94731400	Enhancers	K562	blood
50	chr10:94730800-94731600	Weak transcription	Primary hematopoietic stem cells	blood

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