Variant report

Variant	rs7082214
Chromosome Location	chr10:94740527-94740528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94740523..94743035-chr10:94748693..94750893,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10509647	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10748584	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10786059	1.00[CHB][hapmap]
rs10786060	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10882117	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10882121	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs10882123	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10882125	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10882129	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10882132	0.85[AFR][1000 genomes]
rs10882133	0.92[EUR][1000 genomes]
rs10882134	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10882135	0.92[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10882136	0.84[ASN][1000 genomes]
rs10882137	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882138	0.92[EUR][1000 genomes]
rs11187186	0.84[CEU][hapmap]
rs11187212	0.87[EUR][1000 genomes]
rs11187226	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11516919	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs12251276	0.85[AFR][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs1969905	0.86[AFR][1000 genomes]
rs1987017	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs1998861	0.92[EUR][1000 genomes]
rs2031616	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2094231	0.80[EUR][1000 genomes]
rs2490739	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs2490741	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs3740380	0.84[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap]
rs4508117	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs4918435	0.84[ASN][1000 genomes]
rs4919312	0.90[EUR][1000 genomes]
rs4933753	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs4933755	0.86[EUR][1000 genomes]
rs6583852	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7068012	0.80[EUR][1000 genomes]
rs7068232	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7069010	0.84[EUR][1000 genomes]
rs7085308	0.87[EUR][1000 genomes]
rs7087174	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs7094393	0.87[EUR][1000 genomes]
rs7095772	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs7906224	0.91[TSI][hapmap]
rs7907142	0.84[CEU][hapmap]
rs7908826	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.89[TSI][hapmap]
rs7914459	0.85[AFR][1000 genomes]
rs7914571	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs7915463	0.93[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs7916038	0.84[CEU][hapmap];0.84[GIH][hapmap];0.91[TSI][hapmap]
rs7919589	0.81[EUR][1000 genomes]
rs7923502	0.87[GIH][hapmap];0.93[TSI][hapmap]
rs8211	0.93[CHB][hapmap]
rs835238	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs835247	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9633694	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs980203	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv551941	chr10:94670849-94782735	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv551942	chr10:94695617-94810665	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv467435	chr10:94716313-94779550	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv551943	chr10:94716313-94779550	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
2	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
3	chr10:94662600-94748400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr10:94710400-94741400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:94712600-94787800	Weak transcription	Left Ventricle	heart
6	chr10:94713200-94819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr10:94730800-94753400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:94730800-94773400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:94731600-94777200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:94732200-94742400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:94732600-94780800	Weak transcription	Psoas Muscle	Psoas
12	chr10:94732800-94742400	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:94732800-94750400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr10:94733200-94749400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:94733400-94743600	Weak transcription	Primary T cells from cord blood	blood
16	chr10:94733600-94750400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:94734000-94750400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:94734200-94748800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94734400-94741600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr10:94735000-94759200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:94736000-94753600	Weak transcription	Gastric	stomach
22	chr10:94736800-94748800	Weak transcription	K562	blood
23	chr10:94737600-94741200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:94737600-94744800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94737800-94740800	Weak transcription	HUVEC	blood vessel
26	chr10:94737800-94760000	Weak transcription	Primary B cells from cord blood	blood

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