Variant report

Variant	rs11516919
Chromosome Location	chr10:94618925-94618926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94607215..94609931-chr10:94617680..94621833,3	MCF-7	breast:
2	chr10:94618505..94620451-chr10:94621088..94623863,2	K562	blood:
3	chr10:94616972..94619290-chr10:94622420..94624220,2	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10748584	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10786056	0.92[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786060	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882115	0.87[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10882118	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs10882120	0.98[ASN][1000 genomes]
rs10882121	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882122	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882123	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10882125	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882129	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11187186	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs11187192	0.90[EUR][1000 genomes]
rs11187193	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs11187197	0.90[EUR][1000 genomes]
rs11187212	0.84[EUR][1000 genomes]
rs12769058	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1967817	0.92[ASN][1000 genomes]
rs1987017	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2246696	0.91[ASN][1000 genomes]
rs2422060	0.91[EUR][1000 genomes]
rs2490736	0.97[ASN][1000 genomes]
rs2490739	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2490741	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2901633	0.91[EUR][1000 genomes]
rs2901634	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs3740380	0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs4284324	0.96[ASN][1000 genomes]
rs4417182	0.91[EUR][1000 genomes]
rs4508117	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.94[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933244	0.85[CEU][hapmap]
rs4933748	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933753	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4933755	0.83[EUR][1000 genomes]
rs55944050	0.89[EUR][1000 genomes]
rs7068232	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7085308	0.84[EUR][1000 genomes]
rs7087174	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094393	0.84[EUR][1000 genomes]
rs7095772	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs7097943	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904552	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs7906224	0.85[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes]
rs7907142	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs7908179	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910006	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913949	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs7915463	0.89[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs7916038	0.96[CEU][hapmap];0.93[GIH][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs7923502	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap]
rs835238	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap]
rs9633694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94609200-94621000	Weak transcription	Pancreas	Pancrea
2	chr10:94609600-94622400	Weak transcription	Thymus	Thymus
3	chr10:94609800-94619000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr10:94616800-94622000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:94617400-94619800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr10:94617600-94619800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:94618600-94619800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:94618600-94624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:94618800-94619400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr10:94618800-94619400	Strong transcription	HUVEC	blood vessel
11	chr10:94618800-94619800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
12	chr10:94618800-94619800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links