Variant report

Variant	rs10882121
Chromosome Location	chr10:94622852-94622853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94607148..94609834-chr10:94620974..94623254,3	K562	blood:
2	chr10:94616972..94619290-chr10:94622420..94624220,2	K562	blood:
3	chr10:94618505..94620451-chr10:94621088..94623863,2	K562	blood:
4	chr10:94620024..94623190-chr10:94629225..94632349,3	MCF-7	breast:
5	chr10:94620976..94622865-chr10:94624489..94626160,2	K562	blood:
6	chr10:94607148..94609152-chr10:94620974..94623254,2	K562	blood:
7	chr10:94606071..94608655-chr10:94622629..94624565,2	MCF-7	breast:
8	chr10:94621432..94625440-chr10:94626833..94628903,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10509647	0.81[EUR][1000 genomes]
rs10748584	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10786056	0.92[ASN][1000 genomes]
rs10786059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10786060	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882115	0.87[ASN][1000 genomes]
rs10882117	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10882118	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs10882120	0.98[ASN][1000 genomes]
rs10882122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882123	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10882125	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882129	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11187186	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11187192	0.97[EUR][1000 genomes]
rs11187193	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs11187197	0.97[EUR][1000 genomes]
rs11516919	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.88[MEX][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769058	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1571034	1.00[CHB][hapmap];0.81[CHD][hapmap];0.95[JPT][hapmap]
rs1967817	0.92[ASN][1000 genomes]
rs1987017	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2246696	0.91[ASN][1000 genomes]
rs2422060	0.95[EUR][1000 genomes]
rs2490736	0.97[ASN][1000 genomes]
rs2490739	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2490741	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2901633	0.98[EUR][1000 genomes]
rs2901634	0.96[CEU][hapmap];0.98[EUR][1000 genomes]
rs3740380	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs4284324	0.96[ASN][1000 genomes]
rs4417182	0.94[EUR][1000 genomes]
rs4508117	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933244	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs4933748	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4933750	0.82[EUR][1000 genomes]
rs4933753	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs55944050	0.95[EUR][1000 genomes]
rs6583845	0.82[EUR][1000 genomes]
rs6583850	0.81[EUR][1000 genomes]
rs6583852	0.81[EUR][1000 genomes]
rs7068012	0.83[EUR][1000 genomes]
rs7068232	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7078801	0.83[EUR][1000 genomes]
rs7081789	0.82[EUR][1000 genomes]
rs7087174	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7095772	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs7097943	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7904552	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs7906224	0.84[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs7907142	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7908179	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7911519	0.82[EUR][1000 genomes]
rs7913949	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914571	0.89[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.80[MKK][hapmap];0.91[TSI][hapmap]
rs7915463	1.00[CEU][hapmap];0.93[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs7916038	0.84[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7919095	0.83[EUR][1000 genomes]
rs7919589	0.84[EUR][1000 genomes]
rs7923502	0.96[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.82[EUR][1000 genomes]
rs8211	0.93[CHB][hapmap]
rs835238	1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[GIH][hapmap];0.88[MEX][hapmap];0.91[TSI][hapmap]
rs9633694	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94618600-94624800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:94619400-94624400	Weak transcription	Primary T cells from cord blood	blood
3	chr10:94619600-94624200	Weak transcription	HUVEC	blood vessel
4	chr10:94619800-94624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr10:94619800-94624200	Weak transcription	Dnd41	blood
6	chr10:94619800-94626800	Weak transcription	K562	blood
7	chr10:94619800-94627000	Weak transcription	A549	lung
8	chr10:94619800-94628800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:94619800-94632800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:94620000-94624000	Weak transcription	Primary B cells from cord blood	blood
11	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:94621400-94625000	Weak transcription	Pancreas	Pancrea
13	chr10:94622400-94624600	Strong transcription	Primary hematopoietic stem cells	blood
14	chr10:94622400-94632400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:94622600-94623800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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