Variant report

Variant	rs10786060
Chromosome Location	chr10:94666581-94666582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10509647	0.97[ASN][1000 genomes]
rs10748584	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap]
rs10748585	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786056	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10786058	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786061	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786063	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882117	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs10882120	0.94[CEU][hapmap]
rs10882121	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs10882123	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs10882125	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882126	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882127	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882129	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882130	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882132	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882135	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882136	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187209	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187212	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11516919	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11812460	0.82[GIH][hapmap]
rs12251276	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12256889	0.80[GIH][hapmap]
rs1409385	0.87[GIH][hapmap];0.81[TSI][hapmap]
rs1409386	0.87[GIH][hapmap];0.81[TSI][hapmap]
rs1571034	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1969905	0.86[EUR][1000 genomes]
rs1987017	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.80[EUR][1000 genomes]
rs2274374	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490739	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs2490741	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs4508117	1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs4917670	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918435	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933245	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933246	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933744	0.87[GIH][hapmap]
rs4933751	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933753	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933754	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933755	0.96[ASN][1000 genomes]
rs4933756	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583852	0.97[ASN][1000 genomes]
rs7068012	0.96[ASN][1000 genomes]
rs7068232	0.93[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.92[TSI][hapmap];0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7078801	0.97[ASN][1000 genomes]
rs7085308	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7087174	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7094393	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7095772	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.98[ASN][1000 genomes]
rs7910006	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs7914459	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7915463	0.93[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.98[ASN][1000 genomes]
rs7919095	0.98[ASN][1000 genomes]
rs7919589	0.98[ASN][1000 genomes]
rs8211	0.93[CHB][hapmap]
rs835238	1.00[CHB][hapmap];0.94[CHD][hapmap]
rs9633694	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs9633696	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645558	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980203	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv1847300	chr10:94660133-94670849	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
3	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
4	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
5	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
6	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
7	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
11	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
12	chr10:94652600-94718000	Weak transcription	Ovary	ovary
13	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
14	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
16	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
18	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
19	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
20	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
25	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
27	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:94655600-94667800	Weak transcription	Fetal Intestine Small	intestine
29	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
30	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
31	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
33	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr10:94657800-94667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:94657800-94669600	Weak transcription	K562	blood
36	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:94657800-94680200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:94658000-94688600	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:94658000-94688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:94658000-94732400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:94658000-94750000	Weak transcription	Aorta	Aorta
42	chr10:94658200-94667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr10:94658200-94669600	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:94658200-94682800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr10:94658600-94667200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr10:94658600-94725800	Weak transcription	Lung	lung
47	chr10:94660200-94667000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr10:94660400-94669200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr10:94661800-94666600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:94661800-94672400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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