Variant report

Variant	rs10786058
Chromosome Location	chr10:94656250-94656251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94652243..94655059-chr10:94655281..94657165,2	K562	blood:
2	chr10:94653707..94655226-chr10:94655974..94658255,2	MCF-7	breast:
3	chr10:94653732..94656423-chr10:94657725..94660166,2	K562	blood:
4	chr10:94654369..94656417-chr10:94660704..94662374,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10509647	0.97[ASN][1000 genomes]
rs10748584	0.83[EUR][1000 genomes]
rs10748585	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786056	0.85[EUR][1000 genomes]
rs10786059	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10786060	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786061	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786063	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882117	0.82[EUR][1000 genomes]
rs10882120	0.81[EUR][1000 genomes]
rs10882123	0.84[EUR][1000 genomes]
rs10882125	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882126	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882127	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882129	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882130	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10882132	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10882135	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10882136	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11187209	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11187212	0.98[ASN][1000 genomes]
rs12251276	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1571034	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1967817	0.82[EUR][1000 genomes]
rs1969905	0.83[EUR][1000 genomes]
rs1987017	0.84[EUR][1000 genomes]
rs2274374	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2490736	0.81[EUR][1000 genomes]
rs2490739	0.80[EUR][1000 genomes]
rs2490741	0.80[EUR][1000 genomes]
rs4284324	0.82[EUR][1000 genomes]
rs4917670	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4918435	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4933245	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933246	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933751	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933753	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933754	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933755	0.96[ASN][1000 genomes]
rs4933756	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583852	0.97[ASN][1000 genomes]
rs7068012	0.96[ASN][1000 genomes]
rs7068232	0.84[EUR][1000 genomes]
rs7078801	0.97[ASN][1000 genomes]
rs7085308	0.98[ASN][1000 genomes]
rs7094393	0.98[ASN][1000 genomes]
rs7095772	0.98[ASN][1000 genomes]
rs7914459	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7914571	0.98[ASN][1000 genomes]
rs7915463	0.98[ASN][1000 genomes]
rs7919095	0.98[ASN][1000 genomes]
rs7919589	0.98[ASN][1000 genomes]
rs9633694	0.85[EUR][1000 genomes]
rs9633696	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9645558	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs980203	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94620000-94657600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94633400-94656600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:94638600-94656800	Weak transcription	Primary T cells from cord blood	blood
4	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:94650200-94656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:94650800-94656600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:94652400-94656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:94652400-94656800	Weak transcription	Adipose Nuclei	Adipose
10	chr10:94652400-94657000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:94652400-94657200	Weak transcription	Aorta	Aorta
12	chr10:94652400-94660200	Weak transcription	Spleen	Spleen
13	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
16	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
17	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
18	chr10:94652600-94656400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:94652600-94656400	Weak transcription	K562	blood
20	chr10:94652600-94656800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:94652600-94656800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:94652600-94657000	Weak transcription	Lung	lung
23	chr10:94652600-94657200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:94652600-94657600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr10:94652600-94663800	Weak transcription	Liver	Liver
26	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
27	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
28	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
29	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
32	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
33	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
34	chr10:94652600-94718000	Weak transcription	Ovary	ovary
35	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
36	chr10:94652800-94656400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:94652800-94656600	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:94652800-94657600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
41	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:94653000-94656800	Weak transcription	Dnd41	blood
43	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
44	chr10:94653200-94656800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:94653200-94662200	Weak transcription	HepG2	liver
46	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
47	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
48	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
49	chr10:94654400-94656400	Weak transcription	Thymus	Thymus
50	chr10:94654400-94660600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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